SCUBA

SMARCD3 — SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3

SMARCD3 belongs to a gene co-expression module in 1 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SMARCD3's module in each cell type

Cell typeModuleShares the module with
MonocytesGranulocytic Differentiation
Developmental
CSF3R, GLT1D1, HEBP2, NDUFB9, NRGN, PLP2, PNPLA2, PXN +2 moreView in SCUBA

About the gene

SynonymsBAF60C, CRACD3, Rsc6p
Chromosome7: 151238764-151277896
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Molecular functionChromatin regulator
Biological processNeurogenesis, Transcription, Transcription regulation

Function

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Stimulates nuclear receptor mediated transcription. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.