SCUBA

TIMD4 — T cell immunoglobulin and mucin domain containing 4

TIMD4 belongs to a gene co-expression module in 1 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

TIMD4's module in each cell type

Cell typeModuleShares the module with
CD8⁺ T cellsEffector-Memory CD8
T cell maturation
CD27, CD44, CMC1, CST7, CXCR3, DUSP2, EOMES, F2R +8 moreView in SCUBA

About the gene

SynonymsTIM4
Chromosome5: 156919292-156963226
Predicted locationMembrane
Essential geneNo
Protein classPlasma proteins, Predicted membrane proteins

Function

Phosphatidylserine receptor that plays different role in immune response including phagocytosis of apoptotic cells and T-cell regulation. Controls T-cell activation in a bimodal fashion, decreasing the activation of naive T-cells by inducing cell cycle arrest, while increasing proliferation of activated T-cells by activating AKT1 and ERK1/2 phosphorylations and subsequent signaling pathways (By similarity). Also plays a role in efferocytosis which is the process by which apoptotic cells are removed by phagocytic cells. Mechanistically, promotes the engulfment of apoptotic cells or exogenous particles by securing them to phagocytes through direct binding to phosphatidylserine present on apoptotic cells, while other engulfment receptors such as MERTK efficiently recognize apoptotic cells and mediate their ingestion. Additionally, promotes autophagy process by suppressing NLRP3 inflammasome activity via activation of LKB1/PRKAA1 pathway in a phosphatidylserine-dependent mechanism (By similarity). (Microbial infection) Plays a positive role in exosome- mediated trafficking of HIV-1 virus and its entry into immune cells

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.