SCUBA

Signal Attenuation

Gene co-expression module in Neutrophils

CategoryInnate immunity
Genes9
Annotation certainty3 of 5
Annotation consistency5 of 9 genes have a known function matching the annotation

Why this annotation

CBL is an E3 ubiquitin ligase that mediates receptor ubiquitination and signal termination. PIK3CD (PI3K-delta) is a key lipid kinase in immune cell signaling downstream of immune receptors. AGO4 is an Argonaute family member involved in miRNA-mediated post-transcriptional silencing. SPOPL is a Cullin-RING ubiquitin ligase adaptor. CAB39 activates AMPK. Together, these genes form a signal regulation module combining ubiquitin-proteasome pathway, PI3K signaling, and miRNA-mediated post-transcriptional control, consistent with a receptor signal attenuation/homeostasis program.

Genes

AGO4, CAB39, CBL, EXOC6, NPEPPS, PIK3CD, RNF24, SPOPL, ZNF516

Most correlated modules

Module annotations were drafted by a large language model from the module's genes, then reviewed and approved by a domain expert. See sources & licences.