SCUBA

WDFY3 — WD repeat and FYVE domain containing 3

WDFY3 belongs to a gene co-expression module in 3 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

WDFY3's module in each cell type

Cell typeModuleShares the module with
Lymphatic endothelialFocal Adhesion Migration
migration & adhesion
BIRC6, CDC42BPA, DOCK1, EIF4G3, GNAQ, LPP, NF1, PAM +2 moreView in SCUBA
MacrophagesRho GTPase Signaling
Cytoskeletal
ABHD18, AFF1, ARHGEF7, DIP2B, DNAAF9, DOCK11, EVI5, GNAQ +24 moreView in SCUBA
NeutrophilsEndosomal Vesicle Trafficking
Vesicular traficking
DIP2B, ELF2, JAK1, NRDC, OSBPL8, PCNX1, PICALM, SLC12A6 +3 more

About the gene

SynonymsALFY, KIAA0993, ZFYVE25
Chromosome4: 84668765-84966690
Predicted locationIntracellular
Essential geneNo
Protein classDisease related genes, Human disease related genes, Predicted intracellular proteins
Molecular functionDevelopmental protein
Biological processAutophagy

Function

Required for selective macroautophagy (aggrephagy). Acts as an adapter protein by linking specific proteins destined for degradation to the core autophagic machinery members, such as the ATG5- ATG12-ATG16L E3-like ligase, SQSTM1 and LC3. Along with p62/SQSTM1, involved in the formation and autophagic degradation of cytoplasmic ubiquitin-containing inclusions (p62 bodies, ALIS/aggresome-like induced structures). Along with SQSTM1, required to recruit ubiquitinated proteins to PML bodies in the nucleus. Important for normal brain development. Essential for the formation of axonal tracts throughout the brain and spinal cord, including the formation of the major forebrain commissures. Involved in the ability of neural cells to respond to guidance cues. Required for cortical neurons to respond to the trophic effects of netrin-1/NTN1 (By similarity). Regulates Wnt signaling through the removal of DVL3 aggregates, likely in an autophagy-dependent manner. This process may be important for the determination of brain size during embryonic development. May regulate osteoclastogenesis by acting on the TNFSF11/RANKL - TRAF6 pathway (By similarity). After cytokinetic abscission, involved in midbody remnant degradation. In vitro strongly binds to phosphatidylinositol 3-phosphate (PtdIns3P).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.