SCUBA

TRDC — T cell receptor delta constant

TRDC belongs to a gene co-expression module in 4 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

TRDC's module in each cell type

Cell typeModuleShares the module with
CD8⁺ T cellsIEL Gut Residence
Gut residence
HOPX, ITGA1, KLRC1, KLRC2, KLRD1, LAT2, SPRY1, TRGC1 +1 moreView in SCUBA
Hematopoietic progenitor cellsILC3/γδT Priming
Lymphcyte development
C2CD4D, CCL1, CCR1, CD2, CD7, CHI3L2, FGR, GPR18 +8 more
Innate lymphoid cellsILC1 Actin Motility
Cytoskeleton & motility
ACAP1, ARHGDIB, CORO1A, DGCR6L, EVL, GPSM3, HEXA, LCK +14 moreView in SCUBA
Natural Killer cellsCellular Homeostasis
Metabolism
APRT, ATP5F1E, ATP6V0E1, CD63, DYNLRB1, OAZ1, PSMA7, SSR4 +1 moreView in SCUBA

About the gene

Chromosome14: 22462932-22465787
Predicted locationMembrane
Essential geneNo
Protein classPredicted membrane proteins, T-cell receptor genes
Molecular functionReceptor
Biological processAdaptive immunity, Immunity

Function

Constant region of T cell receptor (TR) delta chain that participates in the antigen recognition. Gamma-delta TRs recognize a variety of self and foreign non-peptide antigens frequently expressed at the epithelial boundaries between the host and external environment, including endogenous lipids presented by MH-like protein CD1D and phosphoantigens presented by butyrophilin-like molecule BTN3A1. Upon antigen recognition induces rapid, innate-like immune responses involved in pathogen clearance and tissue repair. Binding of gamma-delta TR complex to antigen triggers phosphorylation of immunoreceptor tyrosine-based activation motifs (ITAMs) in the CD3 chains by the LCK and FYN kinases, allowing the recruitment, phosphorylation, and activation of ZAP70 that facilitates phosphorylation of the scaffolding proteins LCP2 and LAT. This lead to the formation of a supramolecular signalosome that recruits the phospholipase PLCG1, resulting in calcium mobilization and ERK activation, ultimately leading to T cell expansion and differentiation into effector cells. Gamma-delta TRs are produced through somatic rearrangement of a limited repertoire of variable (V), diversity (D), and joining (J) genes. The potential diversity of gamma-delta TRs is conferred by the unique ability to rearrange (D) genes in tandem and to utilize all three reading frames. The combinatorial diversity is considerably increased by the sequence exonuclease trimming and random nucleotide (N) region additions which occur during the V-(D)-J rearrangements.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.