SCUBA

RAPGEF1 — Rap guanine nucleotide exchange factor 1

RAPGEF1 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

RAPGEF1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsB cell activation
BCR/AP1/NFKb pathway
ADGRG5, BCAR3, CD86, CLIP2, CNOT2, CTSH, FAS, GABARAPL2 +7 moreView in SCUBA
CD4⁺ T cellsIntegrin Rap1 Signaling
migration & adhesion
ARL3, ATP2B4, ATXN1, DR1, GDE1, GNA15, GRAMD1B, GTDC1 +8 moreView in SCUBA
EndothelialEndothelial Junction Identity
Endothelial cell development
ADGRF5, AKAP13, CDH5, CXCL12, DENND5A, FGF12, FURIN, HSPA12B +13 moreView in SCUBA
Gamma-delta T cellsHistone Demethylase Program
DNA/chromatin regulation
BLTP3B, CHD6, ESYT2, KDM6A, NECAP1, PI4K2A, PSME4, RIC1 +4 more
MacrophagesTranscriptional Regulation
Housekeeping
CCSER2, CUX1, ECPAS, EPB41L3, FUBP1, GATAD2A, GNA12, LRRFIP2 +10 moreView in SCUBA
MonocytesG-protein Membrane Remodeling
Migration & adhesion
ADA, ANKRD9, CXCL16, DNMBP, EPB41L3, GFOD1, GNA12, GNA13 +7 moreView in SCUBA
Mucosal-associated invariant T cellEpigenetic Chromatin Regulation
DNA/chromatin regulation
ASXL1, CREBBP, FNIP1, GATAD2A, PELI1, PNRC1, RYBP, ZCCHC2 +1 more
Natural Killer cellsNK Cytotoxic Signaling
Cytotoxicity
BCL2L11, CBLB, CRYBG1, DAZAP2, FYN, GPATCH8, HNRNPUL1, MAPK1 +3 moreView in SCUBA

About the gene

SynonymsC3G, GRF2
Chromosome9: 131576770-131740076
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins
Molecular functionGuanine-nucleotide releasing factor
Biological processNeurogenesis

Function

Guanine nucleotide-releasing protein that binds to SH3 domain of CRK and GRB2/ASH. Transduces signals from CRK to activate RAS. Involved in cell branching and adhesion mediated by BCAR1-CRK-RAPGEF1 signaling and activation of RAP1. Plays a role in the establishment of basal endothelial barrier function. Plays a role in nerve growth factor (NGF)-induced sustained activation of Rap1 and neurite outgrowth.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.