SCUBA

RYBP — RING1 and YY1 binding protein

RYBP belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

RYBP's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsNF-kB signaling
BCR/AP1/NFKb pathway
ARIH1, BACH1, BRAF, HERPUD1, MTMR6, RAB21, RASGEF1B, REL +5 moreView in SCUBA
CD4⁺ T cellsmRNA stability regulation
Immune regulation
APLP2, ARID5B, CARHSP1, GK, GLCCI1, GRAMD4, HIVEP1, METTL8 +12 moreView in SCUBA
FibroblastsCaveolae Mechanosensing
Cytoskeletal
APLP2, ARHGAP18, BDKRB2, CACNA1H, CAV1, CAV2, CD9, CPED1 +10 moreView in SCUBA
Gamma-delta T cellsER Stress Response
Stress
ATP1B3, ATP2A2, BACH1, CPD, EIF2AK3, FAM118A, G3BP2, GRK5 +13 more
Innate lymphoid cellsTranscriptional Activation
DNA regulation & transcription
AKIRIN1, CHORDC1, FAM133B, FAM53C, GOLGB1, GTF2B, IDI1, MORF4L2 +9 moreView in SCUBA
Lymphatic endothelialChromatin Remodeling
DNA/chromatin regulation
ASXL1, CHD1, GATAD2A, KMT2E, LONRF3, MED13, NUP153, PFKFB3 +1 moreView in SCUBA
MacrophagesmRNA Splicing Processing
Housekeeping
ACIN1, ARID3A, BOD1L1, CCNL2, CDK12, CLK4, DCP2, GPATCH2L +20 moreView in SCUBA
Mucosal-associated invariant T cellEpigenetic Chromatin Regulation
DNA/chromatin regulation
ASXL1, CREBBP, FNIP1, GATAD2A, PELI1, PNRC1, RAPGEF1, ZCCHC2 +1 more
NeutrophilsC5aR Complement Activation
Innate immunity
ADGRG3, C5AR1, CD55, ITPRIP, LAPTM5, MCL1, PFKFB3, PTPRE +3 more

About the gene

SynonymsAAP1, DEDAF, YEAF1
Chromosome3: 72371825-72446621
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Molecular functionDNA-binding, Repressor
Biological processApoptosis, Transcription, Transcription regulation

Function

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1-like complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. Component of a PRC1-like complex that mediates monoubiquitination of histone H2A 'Lys-119' on the X chromosome and is required for normal silencing of one copy of the X chromosome in XX females. May stimulate ubiquitination of histone H2A 'Lys-119' by recruiting the complex to target sites (By similarity). Inhibits ubiquitination and subsequent degradation of TP53, and thereby plays a role in regulating transcription of TP53 target genes. May also regulate the ubiquitin-mediated proteasomal degradation of other proteins like FANK1 to regulate apoptosis. May be implicated in the regulation of the transcription as a repressor of the transcriptional activity of E4TF1. May bind to DNA (By similarity). May play a role in the repression of tumor growth and metastasis in breast cancer by down-regulating SRRM3.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.