SCUBA

SYNE1 — Spectrin repeat containing nuclear envelope protein 1

SYNE1 belongs to a gene co-expression module in 10 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SYNE1's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsIntegrin adhesion
migration & adhesion
ATP11B, CD84, CEP85L, CYTH1, HTRA1, ITGAL, MYO7A, PCNX2 +4 moreView in SCUBA
EndothelialCaveolae-mediated Transcytosis
Metabolite transfer
ADIPOR2, CAV1, CAV2, CCDC85A, CD320, EEPD1, EMP2, ENAH +19 moreView in SCUBA
Gamma-delta T cellsTGF-β Migration Program
migration & adhesion
AGTPBP1, AHNAK, CAPN2, CYTH1, FLNA, RAP1GAP2, RASA3, SORL1 +2 more
Glial cellsAHR-Cytokine Activation
Activation
AHR, BHLHE40, CAVIN1, CDH19, HNRNPA3, IL6ST, ITPR1, RBM39 +1 moreView in SCUBA
Lymphatic endothelialActomyosin Contractility
Cytoskeletal
AFAP1L1, C1orf21, COBLL1, EEA1, GNB1, MAP4, OSBPL8, PPP1R12A +6 moreView in SCUBA
MacrophagesMyeloid Differentiation Identity
Developmental
ADCK2, ALOX5, ATP2C1, CCDC6, CDK6, CMTM7, DEF6, EEF2K +21 moreView in SCUBA
MonocytesBPI Antibacterial Response
Antibacterial
ADGRG3, ANXA3, BPI, CMTM2, CST7, CYP4F3, LGALS12, MGAM +6 moreView in SCUBA
Mucosal-associated invariant T cellCytoskeletal Migration
migration & adhesion
AGTPBP1, AHNAK, ATP2B4, DIAPH1, FLNA, IQSEC1, ITCH, ITGA4 +8 more
NeutrophilsDegranulation Trafficking
Degranulation
ATP11A, BIN2, CSGALNACT2, FRY, KDM7A, LPGAT1, PYGL, RAB27A +7 more
PericytesSmooth Muscle Contractile
Cytoskeletal
GPRC5C, MYH11, NET1, NRGN, PALLD, PLN, RERGL, SYNM +2 moreView in SCUBA

About the gene

Synonyms8B, ARCA1, C6orf98, CPG2, dJ45H2.2, enaptin, KIAA0796, MYNE1, Nesp1, Nesprin-1, SCAR8, SYNE-1B
Chromosome6: 152121687-152637801
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classCancer-related genes, Disease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Molecular functionActin-binding
Biological processDifferentiation, Spermatogenesis

Function

Multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain the subcellular spatial organization. As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. May be involved in nucleus- centrosome attachment and nuclear migration in neural progenitors implicating LINC complex association with SUN1/2 and probably association with cytoplasmic dynein-dynactin motor complexes; SYNE1 and SYNE2 may act redundantly. Required for centrosome migration to the apical cell surface during early ciliogenesis. May be involved in nuclear remodeling during sperm head formation in spermatogenesis; a probable SUN3:SYNE1/KASH1 LINC complex may tether spermatid nuclei to posterior cytoskeletal structures such as the manchette.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.