SCUBA

BHLHE40 — Basic helix-loop-helix family member e40

BHLHE40 belongs to a gene co-expression module in 15 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

BHLHE40's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsTNF/NF-kB response
BCR/AP1/NFKb pathway
ADGRE5, ATF3, CHD1, CMTM6, CYLD, DUSP5, FMNL1, IRF2BP2 +7 moreView in SCUBA
CD4⁺ T cellsEffector activation NFkB
TCR/AP1/NFKb pathway
ADAM19, AHR, ARFGAP3, ATF5, CGAS, DUSP5, ETF1, HIPK1 +23 moreView in SCUBA
EndothelialNF-κB Early Response
Inflammation
BCL3, ICAM1, INSIG1, ITPKC, KLF10, LDLR, MYADM, RND1 +3 moreView in SCUBA
FibroblastsBMP-ID Stress Response
Stress
CCDC184, CFAP20, FOXC2, GADD45G, GDF15, GDNF, HAS1, HCAR2 +9 moreView in SCUBA
Gamma-delta T cellsCircadian Clock
DNA/chromatin regulation
CDK17, CPEB2, CRY1, IRF1, ITPRIP, MEF2D, NR1D2, PRKX +5 more
Glial cellsAHR-Cytokine Activation
Activation
AHR, CAVIN1, CDH19, HNRNPA3, IL6ST, ITPR1, RBM39, SYNE1 +1 moreView in SCUBA
Goblet cellsActin Cytoskeletal Remodeling
Cytoskeletal
ACTN4, ACTR3, CAP1, FHL2, KCNK1, LRP10, SDCBP, SLC7A11 +3 moreView in SCUBA
Innate lymphoid cellsILC3 identity
Differentiation
BRD4, CASK, CITED2, GLUL, GNAS, HECA, IGFBP7, IQGAP1 +19 moreView in SCUBA
Lymphatic endothelialStress Granule Assembly
Stress
AMD1, CD55, CDKN1A, DDX3X, DUSP5, EIF4G2, ERF, FUS +3 moreView in SCUBA
MacrophagesAnti-inflammatory Response
Inflammatory
AMPD2, ARRDC2, CBX4, CDKN1B, CEBPD, CITED2, DENND3, EIF4B +31 moreView in SCUBA
MonocytesEpigenetic Inflammatory Reprogramming
Inflammatory
EHD1, KDM6B, PHACTR1, PLEK, PPIF, SMAD7, SOD2, ZNF267View in SCUBA
Mucosal-associated invariant T cellAP-1/MEF2 Activation
T cell maturation
ADNP2, CDK16, DBF4, ETF1, FOSL2, GADD45A, GPR35, GSPT1 +8 more
Natural Killer cellsNF-κB Activation
Inflammation
ADGRE5, BCL3, CSRNP1, DUSP10, NFKB1, NFKB2, NINJ1, OTULIN +3 moreView in SCUBA
PericytesNF-κB Inflammatory Response
Inflammatory
ABL2, ADAMTS9, ARL4A, BCL3, FOSL2, ICAM1, KLF10, PIM3 +3 moreView in SCUBA
Smooth muscle cellsNF-kB Stress Response
Stress
CCNL1, FADS3, HSP90AB1, IER3, MIDN, NFKBIZ, PPP1R15A, THBS1 +1 moreView in SCUBA

About the gene

SynonymsBHLHB2, Clast5, DEC1, SHARP2, STRA13
Chromosome3: 4979437-4985323
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins, Transcription factors
Molecular functionDNA-binding, Repressor
Biological processBiological rhythms, Transcription, Transcription regulation

Function

Transcriptional repressor involved in the regulation of the circadian rhythm by negatively regulating the activity of the clock genes and clock-controlled genes. Acts as the negative limb of a novel autoregulatory feedback loop (DEC loop) which differs from the one formed by the PER and CRY transcriptional repressors (PER/CRY loop). Both these loops are interlocked as it represses the expression of PER1/2 and in turn is repressed by PER1/2 and CRY1/2. Represses the activity of the circadian transcriptional activator: CLOCK-BMAL1|BMAL2 heterodimer by competing for the binding to E-box elements (5'-CACGTG- 3') found within the promoters of its target genes. Negatively regulates its own expression and the expression of DBP and BHLHE41/DEC2. Acts as a corepressor of RXR and the RXR-LXR heterodimers and represses the ligand-induced RXRA and NR1H3/LXRA transactivation activity. May be involved in the regulation of chondrocyte differentiation via the cAMP pathway. Represses the transcription of NR0B2 and attentuates the transactivation of NR0B2 by the CLOCK-BMAL1 complex. Drives the circadian rhythm of blood pressure through transcriptional repression of ATP1B1 in the cardiovascular system.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.