SCUBA

CHD1 — Chromodomain helicase DNA binding protein 1

CHD1 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

CHD1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsTNF/NF-kB response
BCR/AP1/NFKb pathway
ADGRE5, ATF3, BHLHE40, CMTM6, CYLD, DUSP5, FMNL1, IRF2BP2 +7 moreView in SCUBA
CD4⁺ T cellsIL6-STAT3 Signaling
Intercellular communication
ARID5A, ARL6IP1, AZIN1, CCDC66, CDC40, CEMIP2, CSNK1D, EIF4G2 +13 moreView in SCUBA
Gamma-delta T cellsMAPK Kinase Signaling
TCR Signaling
ARIH1, B4GALT1, BRAF, CDK16, DYRK1A, GNA13, KDM2A, MAP3K2 +8 more
Innate lymphoid cellsProstaglandin-AP1 Response
Inflammation
ARIH1, ARL5B, CCNT1, CXCL2, ETV3, FOSL2, IRF2BP2, JOSD1 +12 moreView in SCUBA
Lymphatic endothelialChromatin Remodeling
DNA/chromatin regulation
ASXL1, GATAD2A, KMT2E, LONRF3, MED13, NUP153, PFKFB3, RYBP +1 moreView in SCUBA
MacrophagesAutophagy Vesicle Trafficking
Lysosomal & pahgocytosis
ADNP2, AGO2, AP1G1, ARFGAP3, ATG2A, BANP, CHD2, ERCC6 +26 moreView in SCUBA
MonocytesWnt/AP-1 Activation
Inflammatory
B4GALT1, BZW1, CTNNB1, ETF1, FOSL2, GABARAPL1, GPCPD1, PNPLA8 +2 moreView in SCUBA
Mucosal-associated invariant T cellRUNX3 Tissue Identity
T cell maturation
B4GALT1, CD44, CDK17, CYLD, EML4, EP300, GPBP1, KMT2E +10 more
Natural Killer cellsNK Immune Checkpoint
Immune regulation
AKAP13, G3BP2, LIMS1, MORF4L2, P2RY10, PTPN22, RANBP2, SAMSN1 +1 moreView in SCUBA

About the gene

Chromosome5: 98853985-98929007
Predicted locationIntracellular
Essential geneNo
Protein classDisease related genes, Enzymes, Human disease related genes, Potential drug targets, Predicted intracellular proteins
Molecular functionChromatin regulator, DNA-binding, Hydrolase
Biological processTranscription, Transcription regulation

Function

ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin-remodeling, but also required to maintain a specific chromatin configuration across the genome. Is also associated with histone deacetylase (HDAC) activity (By similarity). Required for the bridging of SNF2, the FACT complex, the PAF complex as well as the U2 snRNP complex to H3K4me3. Functions to modulate the efficiency of pre- mRNA splicing in part through physical bridging of spliceosomal components to H3K4me3. Required for maintaining open chromatin and pluripotency in embryonic stem cells (By similarity).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.