SCUBA

CIRBP — Cold inducible RNA binding protein

CIRBP belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

CIRBP's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsChromatin transcription regulation
DNA/chromatin regulation
ADAM10, CLIP1, CUL9, GRPEL2, HBP1, KDM2A, NCOA3, NSD3 +10 moreView in SCUBA
EndothelialHypoxia Stress Response
Stress
ABCA5, ALDH2, BAALC, EGLN3, EPB41, FARP1, FTL, LRP5 +7 moreView in SCUBA
Gamma-delta T cellsTCR Early Activation
TCR Signaling
BTG1, BTG2, CD69, CXCR4, DUSP1, EIF1, ETV3, FOS +15 more
Glial cellsActin Cytoskeletal Organization
Cytoskeletal
ACTB, ACTG1, CALM1, CFL1, DYNLL1, ELOC, MORF4L2, PPIA +1 moreView in SCUBA
Innate lymphoid cellsRNA Processing & Proteostasis
RNA processing & translation
ATP5PD, COPS6, DPY30, MORF4L1, MYDGF, PDIA6, PNISR, POLR2J +5 moreView in SCUBA
MacrophagesRNA Splicing Processing
Housekeeping
ARMCX3, ELK4, GATAD1, H3-3B, HNRNPA2B1, HNRNPA3, HNRNPL, HP1BP3 +13 moreView in SCUBA
Mucosal-associated invariant T cellRNA Splicing m6A
RNA processing & translation
ARF1, ARF6, ATP5F1B, CORO7, EIF1B, EIF5A, EMD, GUK1 +15 more
Smooth muscle cellsUbiquitous Housekeeping Transcripts
Housekeeping
ATP6V1G1, C12orf57, FIS1, GSTP1, ISCU, NDUFB8, NUPR1, PEBP1 +3 moreView in SCUBA

About the gene

SynonymsCIRP
Chromosome19: 1259384-1274880
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins
Molecular functionActivator, Repressor, RNA-binding
Biological processStress response

Function

Cold-inducible mRNA binding protein that plays a protective role in the genotoxic stress response by stabilizing transcripts of genes involved in cell survival. Acts as a translational activator. Seems to play an essential role in cold-induced suppression of cell proliferation. Binds specifically to the 3'-untranslated regions (3'- UTRs) of stress-responsive transcripts RPA2 and TXN. Acts as a translational repressor (By similarity). Promotes assembly of stress granules (SGs), when overexpressed.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.