SCUBA

LSM4 — LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated

LSM4 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

LSM4's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsRNA Processing
RNA processing
ANP32A, CCDC167, CDK4, CENPX, CYC1, FDPS, GGCT, LSM3 +14 moreView in SCUBA
CD8⁺ T cellsGeneral Housekeeping
Housekeeping
ANAPC11, ANP32B, ARPC5, BANF1, CALM3, CARHSP1, COX8A, HMGN1 +5 moreView in SCUBA
EndothelialNuclear Transport
Housekeeping
AAMDC, ANP32B, CBX5, CDK4, CKAP4, COMMD4, COQ2, CSE1L +18 moreView in SCUBA
Gamma-delta T cellsmRNA Splicing & Trafficking
RNA processing & translation
ARF1, ARL6IP1, ARRDC2, B3GNT2, C17orf49, CCDC12, CWC15, DDX39A +19 more
Goblet cellsSpliceosome Assembly
RNA processing & translation
ALYREF, ANAPC11, BANF1, MRPL51, PPIH, PTBP1, RAN, RANBP1 +8 moreView in SCUBA
Innate lymphoid cellsmTOR Metabolic Stress
Stress
ADPGK, AKR1A1, ATP5IF1, BAX, CPNE1, GLO1, GSTO1, HNRNPR +9 moreView in SCUBA
MacrophagesMitotic Spindle Assembly
Cell cycle
ACTL6A, AKR7A2, ANP32E, BOLA3, BUB3, CCDC167, CENPW, CENPX +34 moreView in SCUBA
Mucosal-associated invariant T cellRNA Biogenesis & Folding
Housekeeping
ADH5, CCT3, CTDSP1, FAM117A, FKBP1A, FKBP8, MAT2B, MFSD10 +6 more

About the gene

SynonymsYER112W
Chromosome19: 18306236-18323112
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Predicted intracellular proteins
Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Function

Plays a role in pre-mRNA splicing as component of the U4/U6- U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.