SCUBA

HMGN1 — High mobility group nucleosome binding domain 1

HMGN1 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

HMGN1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsChromatin Regulation
DNA/chromatin regulation
BIK, DSTN, GCHFR, GRHPR, HDAC1, IMP4, LYPLA1, METAP2 +3 moreView in SCUBA
CD8⁺ T cellsGeneral Housekeeping
Housekeeping
ANAPC11, ANP32B, ARPC5, BANF1, CALM3, CARHSP1, COX8A, LSM4 +5 moreView in SCUBA
EndothelialNuclear Transport
Housekeeping
ALYREF, BANF1, CNIH4, COX8A, HAUS1, ILF2, LSM5, MRPL51 +8 moreView in SCUBA
Gamma-delta T cellsMitochondrial ETC
Mitochondrial & OxPhos
COX7B, HMGB1, HMGXB4, LSM5, NDUFB6, PSMA6, RANGRF, RBM17 +5 more
Glial cellsGlial Adhesion Identity
migration & adhesion
ADAM23, CADM4, CALU, DAG1, HMCN1, ITGA2, PTPRZ1, SDC3 +2 moreView in SCUBA
Goblet cellsChromatin Organization
chromatin regulation & transcription
CBX3, HMGB1, HMGB3, HNRNPA2B1, PTMA, STMN1, TPRKBView in SCUBA
Innate lymphoid cellsActin Cytoskeleton Remodeling
Cytoskeleton & motility
APRT, ARPC2, ARPC3, ATP5F1E, ATP6V0E1, C11orf58, CFL1, CHCHD2 +17 moreView in SCUBA
Natural Killer cellsOxidative Stress Response
Stress
BANF1, CCDC167, CCT6A, CHCHD2, HINT1, HNRNPF, NPM1, PA2G4 +2 moreView in SCUBA
Smooth muscle cellsGeneric maintenance transcripts
Housekeeping
CHMP2A, EMP3, MRPL57, NCKAP1, PAIP2, PSMB2, SLC25A5, TAX1BP3 +5 moreView in SCUBA

About the gene

SynonymsFLJ27265, FLJ31471, HMG14, MGC104230, MGC117425
Chromosome21: 39342315-39349647
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Molecular functionDNA-binding

Function

Binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer. May be involved in the process which maintains transcribable genes in a unique chromatin conformation. Inhibits the phosphorylation of nucleosomal histones H3 and H2A by RPS6KA5/MSK1 and RPS6KA3/RSK2 (By similarity)

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.