SCUBA

RFTN1 — Raftlin, lipid raft linker 1

RFTN1 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

RFTN1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsActin cytoskeleton remodeling
Cytoskeletal
ACTR2, BASP1, CAPZA1, CDV3, EIF3A, FAM107B, GRB2, HCLS1 +9 moreView in SCUBA
CD4⁺ T cellsTh1 IL12 response
Immune regulation
ADCY3, AKIRIN2, CTNNA1, ETV7, HIVEP3, IL12RB2, JAKMIP1, PTPN1 +2 moreView in SCUBA
EndothelialEndothelial Junction Identity
Endothelial cell development
ADGRF5, AKAP13, CDH5, CXCL12, DENND5A, FGF12, FURIN, HSPA12B +13 moreView in SCUBA
FibroblastsHomeostatic Fibroblast Identity
ECM production
ADGRL2, C1S, DCN, DKK3, DPYSL2, IL34, IL6ST, LUM +6 moreView in SCUBA
Gamma-delta T cellsNK-like Mature gd-T
cytotoxicity
ABHD2, ATG9A, CEP78, HAVCR2, HSH2D, IFIT2, ITGAX, KIR2DL1 +14 more
MonocytesG-protein Membrane Remodeling
Migration & adhesion
ADA, ANKRD9, CXCL16, DNMBP, EPB41L3, GFOD1, GNA12, GNA13 +7 moreView in SCUBA
Mucosal-associated invariant T cellTranscriptional Repression
Immune regulation
ANKRD11, CMIP, MXI1, NR3C1, PELI2, PROSER1, RB1CC1, RCOR1 +7 more
PericytesTGF-β Cytoskeletal Remodeling
Cytoskeletal
ARHGEF12, ASAP1, GRK5, LRRC32, MYH9, RAPGEF2, SERPINH1, TCEAL9 +2 moreView in SCUBA

About the gene

SynonymsFLJ23866, KIAA0084, MIG2, Raftlin
Chromosome3: 16313574-16514026
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins

Function

Involved in protein trafficking via association with clathrin and AP2 complex. Upon bacterial lipopolysaccharide stimulation, mediates internalization of TLR4 to endosomes in dendritic cells and macrophages; and internalization of poly(I:C) to TLR3-positive endosomes in myeloid dendritic cells and epithelial cells; resulting in activation of TICAM1-mediated signaling and subsequent IFNB1 production. Involved in T-cell antigen receptor-mediated signaling by regulating tyrosine kinase LCK localization, T-cell dependent antibody production and cytokine secretion (By similarity). May regulate B-cell antigen receptor-mediated signaling. May play a pivotal role in the formation and/or maintenance of lipid rafts.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.