SCUBA

LSM2 — LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated

LSM2 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

LSM2's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsInterferon-stimulated genes
Anti-viral
APOBEC3G, ARPC4, ARPC5L, BAK1, BST2, DCTN3, ECH1, ETFB +14 moreView in SCUBA
CD8⁺ T cellsMitochondrial ETC/OxPhos
Mitochondrial & OxPhos
AP2S1, BAX, COX6A1, ERH, HSD17B10, MAD2L2, MEA1, MRPL23 +7 moreView in SCUBA
EndothelialOxidative Phosphorylation
Mitochondrial & OxPhos
ATP5F1D, ATP5MC2, ATP5PO, COX7C, ERP29, HIGD2A, HINT1, IMPDH2 +10 moreView in SCUBA
Gamma-delta T cellsDNA Repair Housekeeping
Housekeeping
ANAPC16, CCDC85B, CDIP1, CKLF, COTL1, DNAJC4, ECH1, ERCC1 +10 more
Goblet cellsMitochondrial Chaperone
Protein processing & ER
ANP32B, C1QBP, CACYBP, DEK, HSPD1, HSPE1, LDHB, PA2G4View in SCUBA
Innate lymphoid cellsILC1 Lymphocyte Signaling
Immune regulation
CDIPT, CNPY3, DBNL, ENG, IL16, LIMD2, MAPKAPK3, PHYKPL +11 moreView in SCUBA
MacrophagesMitotic Spindle Assembly
Cell cycle
ACTL6A, AKR7A2, ANP32E, BOLA3, BUB3, CCDC167, CENPW, CENPX +34 moreView in SCUBA
Mucosal-associated invariant T cellMitochondrial Housekeeping
Mitochondrial & OxPhos
ARPC3, DUT, GNB2, GPSM3, NAA38, NDUFB10, PLEKHJ1, REX1BD +7 more

About the gene

SynonymsC6orf28, G7b, YBL026W
Chromosome6: 31797396-31806966
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Plasma proteins, Predicted intracellular proteins
Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Function

Plays a role in pre-mRNA splicing as component of the U4/U6- U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.