SCUBA

SNRPD1 — Small nuclear ribonucleoprotein D1 polypeptide

SNRPD1 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SNRPD1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsSpliceosome snRNP
RNA processing
CHCHD2, COX7B, GHITM, MAGOH, PPIA, RAN, SNRPB, SNRPC +4 moreView in SCUBA
CD4⁺ T cellsOxidative Phosphorylation
Mitochondrial & OxPhos
ANP32A, ATP5F1A, ATP5F1B, COX7A2, COX7B, GADD45GIP1, GNG5, MRPL21 +10 moreView in SCUBA
CD8⁺ T cellsCellular Housekeeping
Housekeeping
ACAT2, ACOT7, CISD2, FDPS, NUDT21, PA2G4, PPIA, PSMC3 +9 moreView in SCUBA
FibroblastsProteasome Biogenesis
Housekeeping
EIF5A, MRPL14, NME1, NOP10, POMP, SEC61B, SEC61G, SNRPE +1 moreView in SCUBA
Gamma-delta T cellssnRNP Splicing
RNA processing & translation
CHCHD2, DAZAP1, GAPDH, GIT1, GUK1, HDGF, ILF2, LAMTOR5 +16 more
Goblet cellsSpliceosome Assembly
RNA processing & translation
ALYREF, ANAPC11, BANF1, LSM4, MRPL51, PPIH, PTBP1, RAN +8 moreView in SCUBA
Hematopoietic progenitor cellsRNA Processing Housekeeping
Housekeeping
ATP5MC1, C1QBP, CDK4, DUT, FABP5, HSPE1, LSM5, NDUFAF8 +8 more
Innate lymphoid cellsProteasome ER Proteostasis
Protein processing & ER
ATP5MC1, ATP5PF, DBI, GNG5, GTF3C6, HNRNPK, IL4I1, MANF +19 moreView in SCUBA
MacrophagesSpliceosomal snRNP
Cell cycle
ANAPC11, BANF1, CCDC25, CCT8, ERH, FIBP, FKBP3, GLRX5 +30 moreView in SCUBA

About the gene

SynonymsHsT2456, Sm-D1, SNRPD
Chromosome18: 21612314-21633524
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Plasma proteins, Predicted intracellular proteins
Molecular functionRibonucleoprotein
Biological processmRNA processing, mRNA splicing

Function

Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. As a component of the minor spliceosome, involved in the splicing of U12- type introns in pre-mRNAs. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.