SCUBA

SNRPB — Small nuclear ribonucleoprotein polypeptides B and B1

SNRPB belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SNRPB's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsSpliceosome snRNP
RNA processing
CHCHD2, COX7B, GHITM, MAGOH, PPIA, RAN, SNRPC, SNRPD1 +4 moreView in SCUBA
CD8⁺ T cellsCellular Housekeeping
Housekeeping
CDC123, CHCHD2, COX5A, MRPL52, NUDT5, PDIA6, PSMB6, PSMC1 +3 moreView in SCUBA
EndothelialSpliceosome snRNP Assembly
RNA processing & translation
BAX, CBX3, CCT2, CCT4, EIF3I, FGFR1, HNRNPAB, HNRNPC +6 moreView in SCUBA
Gamma-delta T cellssnRNP Splicing
RNA processing & translation
CHCHD2, DAZAP1, GAPDH, GIT1, GUK1, HDGF, ILF2, LAMTOR5 +16 more
Goblet cellsSpliceosome Assembly
RNA processing & translation
ALYREF, ANAPC11, BANF1, LSM4, MRPL51, PPIH, PTBP1, RAN +8 moreView in SCUBA
Hematopoietic progenitor cellsNucleotide Metabolism
Housekeeping
DCTPP1, DNPH1, EIF4EBP1, FKBP4, GCSH, METTL26, MRPL12, NHP2 +2 more
Innate lymphoid cellsProteasome ER Proteostasis
Protein processing & ER
ATP5MC1, ATP5PF, DBI, GNG5, GTF3C6, HNRNPK, IL4I1, MANF +19 moreView in SCUBA
Lymphatic endothelialRNA Protein Homeostasis
RNA processing & translation
ADRM1, BAG1, COPRS, ILF2, RAB32, RAN, RBM8A, SLC25A5 +2 moreView in SCUBA
MacrophagesMixed Housekeeping
Housekeeping
AP2M1, BAG1, CHMP4A, CISD2, COA6, CSNK2B, CYB5R3, DEGS1 +20 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Activation
Immune regulation
BCL3, FURIN, GTF3C1, IRAK1, IRS2, ISCA1, PITHD1, PRELID3B +3 more
Natural Killer cellsGlycolytic Metabolism
Metabolism
COX5A, ENO1, GAPDH, MZT2A, MZT2B, PARP1, PRKDC, SET +2 moreView in SCUBA

About the gene

SynonymsCOD, Sm-B/B', SmB/SmB', snRNP-B, SNRPB1
Chromosome20: 2461634-2470853
Predicted locationIntracellular
Essential geneYes
Protein classDisease related genes, Essential proteins, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Function

Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.