SCUBA

CNOT6L — CCR4-NOT transcription complex subunit 6 like

CNOT6L belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

CNOT6L's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsTranscription/RNA processing
RNA processing
ANKRD17, BDP1, CCDC97, CDK13, CHIC2, CLK4, CRNKL1, ELF1 +29 moreView in SCUBA
EndothelialEndothelial Lipid Signaling
migration & adhesion
A2M, ADGRG1, ARHGEF15, CYYR1, DIP2B, HIP1R, PCDH1, PITPNC1 +3 moreView in SCUBA
Gamma-delta T cellsTCR Threshold Regulation
TCR Signaling
AGO2, ATP8A1, AUTS2, CMIP, CSNK1D, FOXO1, GSPT1, MAP3K8 +8 more
Innate lymphoid cellsRNA Processing
RNA processing & translation
C1orf56, CD53, EVI2A, HNRNPH2, HSD17B11, MAPRE1, METTL15, NOP53 +3 moreView in SCUBA
MacrophagesPost-transcriptional Regulation
Housekeeping
AKAP10, ATF7IP, ATRN, ATXN2, BAZ2B, BLTP1, BRWD1, CELF2 +34 moreView in SCUBA
Mucosal-associated invariant T cellSWI/SNF Chromatin Remodeling
DNA/chromatin regulation
ABTB3, AOAH, ARID1B, ARID2, ATP8A1, ATXN1, BRAF, CCSER2 +13 more
Natural Killer cellsNRF2 Stress Response
Stress
C1orf56, CWC25, DDX18, FAM133B, JOSD1, KMT2E, NFE2L2, PRMT9 +2 moreView in SCUBA
PericytesRAS-Chromatin Signaling
Housekeeping
CD2AP, EFCAB14, SKAP2, SMARCA2, SOS1, TMTC1, WNK1View in SCUBA

About the gene

SynonymsCcr4b, DKFZp434K098
Chromosome4: 77713387-77819615
Predicted locationIntracellular
Essential geneNo
Protein classEnzymes, Predicted intracellular proteins
Molecular functionExonuclease, Hydrolase, Nuclease
Biological processmRNA processing, RNA-mediated gene silencing, Transcription, Transcription regulation, Translation regulation

Function

Has 3'-5' poly(A) exoribonuclease activity for synthetic poly(A) RNA substrate. Catalytic component of the CCR4-NOT complex which is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA- mediated repression, translational repression during translational initiation and general transcription regulation. Additional complex functions may be a consequence of its influence on mRNA expression. May be involved in the deadenylation-dependent degradation of mRNAs through the 3'-UTR AU-rich element-mediated mechanism. Involved in deadenylation-dependent degradation of CDKN1B mRNA. Its mRNA deadenylase activity can be inhibited by TOB1. Mediates cell proliferation and cell survival and prevents cellular senescence.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.