SCUBA

LYST — Lysosomal trafficking regulator

LYST belongs to a gene co-expression module in 10 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

LYST's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsTGF-beta/differentiation
Intercellular communication
CDC42SE1, CEMIP2, ENC1, KLF3, SLC12A6, SMAD3, ST3GAL1, TSPAN3View in SCUBA
CD4⁺ T cellsActivated effector Tcell
Immune regulation
APOBEC3C, ARPP19, CISD2, CTSC, ENTPD1, GLUD1, IL2RB, MICAL2 +4 moreView in SCUBA
CD8⁺ T cellsT cell Immune Tolerance
Immune regulation
ARID5B, CBLB, DTHD1, NAMPT, STAT3, TNFRSF1B, TRAF5View in SCUBA
EndothelialQuiescent EC Identity
Endothelial cell development
ADGRG6, BCAT1, C3orf80, CELF2, CPE, KLF8, KLK10, PCDH19 +5 moreView in SCUBA
Gamma-delta T cellsEffector Cytokine Secretion
Inflammation
APBA2, ASPH, CCL3, CCL4, CMC1, CYRIA, DTHD1, DTNBP1 +25 more
MacrophagesmRNA Splicing Processing
Housekeeping
ACIN1, ARID3A, BOD1L1, CCNL2, CDK12, CLK4, DCP2, GPATCH2L +20 moreView in SCUBA
MonocytesCCR2+ Monocyte Identity
Innate immunity
CCR2, GAPT, MAP3K1, MNDA, POU2F2, RGS18, SLC24A4, TMEM154 +4 moreView in SCUBA
Mucosal-associated invariant T cellChromatin Regulation
DNA/chromatin regulation
ATF7IP2, CHD6, KLF3, NLRP1, OSBPL8, P2RY8, SF3B6, SNU13 +1 more
Natural Killer cellsMature NK Identity
Cytotoxicity
GMFG, IFITM2, KLF2, KLRD1, KLRF1, SAMD3, TSPO, XBP1View in SCUBA
NeutrophilsGranulopoiesis Program
Developmental
ARHGAP24, ARID1B, B4GALT5, CSGALNACT1, FLI1, IQGAP2, PDZD8, PHIP +5 more

About the gene

SynonymsCHS, CHS1, Mauve
Chromosome1: 235661041-235883724
Predicted locationIntracellular
Essential geneNo
Protein classDisease related genes, Human disease related genes, Predicted intracellular proteins
Biological processPhagocytosis, Protein transport, Transport

Function

Adapter protein that regulates and/or fission of intracellular vesicles such as lysosomes. Might regulate trafficking of effectors involved in exocytosis. In cytotoxic T-cells and natural killer (NK) cells, has role in the regulation of size, number and exocytosis of lytic granules. In macrophages and dendritic cells, regulates phagosome maturation by controlling the conversion of early phagosomal compartments into late phagosomes (By similarity). In macrophages and dendritic cells, specifically involved in TLR3- and TLR4-induced production of pro-inflammatory cytokines by regulating the endosomal TLR3- TICAM1/TRIF and TLR4- TICAM1/TRIF signaling pathways.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.