SCUBA

TMEM59 — Transmembrane protein 59

TMEM59 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

TMEM59's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsCytoskeleton & metabolism
Cytoskeletal
ATP5F1D, ATP5MC3, ATP6V0E1, BRK1, CAP1, LCK, MYL6, NEDD8 +11 moreView in SCUBA
EnterocytesMature colonocyte absorptive
Absorption
ADI1, BRI3, BTG1, CAMK2N1, CTSZ, FXYD3, GUCA2A, GUCA2B +9 moreView in SCUBA
FibroblastsER-Golgi Trafficking
Vesicular traficking
ANXA5, ARF1, ATP6AP2, MORF4L1, MTDH, OCIAD1, PTGES3, RAB2A +6 moreView in SCUBA
Gamma-delta T cellsNKG2D Cytotoxic Activation
cytotoxicity
CCND3, GABARAP, HCST, HDAC10, IER3IP1, IL2RG, KLRK1, KRTCAP2 +11 more
Goblet cellsEpithelial Membrane Identity
Epithelial development
EIF3H, EPCAM, ITM2B, PDLIM1, RAC1, SLC25A3, TMEM176A, TMEM176B +1 moreView in SCUBA
Innate lymphoid cellsProtein Biogenesis & Import
Protein processing & ER
ANAPC16, ATP6AP2, CD164, COMMD6, EEF1D, KLRB1, NACA, PFDN5 +6 moreView in SCUBA
MacrophagesER Protein Processing
Housekeeping
ACTR1A, ANXA7, ATP6AP1, ATP6AP2, ATP6V0B, ATP6V0E1, AUP1, BCAP31 +41 moreView in SCUBA
Smooth muscle cellsRibonucleoprotein & translation
RNA processing & translation
CRYAB, CYB5R3, EEF1B2, HMGB1, HNRNPC, LAPTM4A, MAGED2, NACA +5 moreView in SCUBA

About the gene

SynonymsC1orf8, HSPC001
Chromosome1: 54026681-54053504
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classPredicted intracellular proteins, Predicted membrane proteins, Transporters
Biological processAutophagy

Function

Acts as a regulator of autophagy in response to S.aureus infection by promoting activation of LC3 (MAP1LC3A, MAP1LC3B or MAP1LC3C). Acts by interacting with ATG16L1, leading to promote a functional complex between LC3 and ATG16L1 and promoting LC3 lipidation and subsequent activation of autophagy. Modulates the O-glycosylation and complex N- glycosylation steps occurring during the Golgi maturation of several proteins such as APP, BACE1, SEAP or PRNP. Inhibits APP transport to the cell surface and further shedding.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.