SCUBA

MYCBP2 — MYC binding protein 2

MYCBP2 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

MYCBP2's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsB-cell signaling regulators
BCR/AP1/NFKb pathway
AKNA, ATF7IP, DNAJB14, FCHSD2, GOLGA4, IKZF3, INPP5D, PDE7A +3 moreView in SCUBA
CD4⁺ T cellsCD200 immunoregulation
Immune regulation
B3GNT2, CAV1, CD200, CD79A, CH25H, CHGB, DUOX1, ELF2 +23 moreView in SCUBA
EndothelialNF-κB Stress Signaling
Inflammation
AKR1C3, ELK4, EPS15, METRNL, NFAT5, PALM, PELI2, PGM5 +4 moreView in SCUBA
Gamma-delta T cellsmTOR-Exocyst Signaling
TCR Signaling
ANKRD36C, ARFGEF1, CGGBP1, CTC1, DOCK11, EXOC1, EXOC4, FRYL +12 more
Innate lymphoid cellsGolgi RNA Processing
RNA processing & translation
ANKRD12, ATM, DDX17, GCC2, GOLGA4, LUC7L3, MIER1, MLEC +11 moreView in SCUBA
MacrophagesPost-transcriptional Regulation
Housekeeping
AKAP10, ATF7IP, ATRN, ATXN2, BAZ2B, BLTP1, BRWD1, CELF2 +34 moreView in SCUBA
Mucosal-associated invariant T cellTCR Activation Signaling
TCR Signaling
ARFGEF1, ARIH1, CARD11, CCDC88C, CD226, GLS, KANSL1, KMT5B +12 more
Smooth muscle cellsCalcium Handling
Contractility
ASAP2, DDX24, NBDY, PDE1A, RBM24, RNF180, RRAS, RYR2 +3 moreView in SCUBA

About the gene

SynonymsFLJ10106, KIAA0916, PAM, PHR1
Chromosome13: 77042474-77327094
Predicted locationIntracellular
Essential geneNo
Protein classEnzymes, Metabolic proteins, Predicted intracellular proteins
Molecular functionGuanine-nucleotide releasing factor, Transferase
Biological processBiological rhythms, Ubl conjugation pathway

Function

Atypical E3 ubiquitin-protein ligase which specifically mediates ubiquitination of threonine and serine residues on target proteins, instead of ubiquitinating lysine residues. Shows esterification activity towards both threonine and serine, with a preference for threonine, and acts via two essential catalytic cysteine residues that relay ubiquitin to its substrate via thioester intermediates. Interacts with the E2 enzymes UBE2D1, UBE2D3, UBE2E1 and UBE2L3. Plays a key role in neural development, probably by mediating ubiquitination of threonine residues on target proteins (Probable). Involved in different processes such as regulation of neurite outgrowth, synaptic growth, synaptogenesis and axon degeneration (By similarity). Required for the formation of major central nervous system axon tracts (By similarity). Required for proper axon growth by regulating axon navigation and axon branching: acts by regulating the subcellular location and stability of MAP3K12/DLK (By similarity). Required for proper localization of retinogeniculate projections but not for eye-specific segregation (By similarity). Regulates axon guidance in the olfactory system (By similarity). Involved in Wallerian axon degeneration, an evolutionarily conserved process that drives the loss of damaged axons: acts by promoting destabilization of NMNAT2, probably via ubiquitination of NMNAT2 (By similarity). Catalyzes ubiquitination of threonine and/or serine residues on NMNAT2, consequences of threonine and/or serine ubiquitination are however unknown. Regulates the internalization of TRPV1 in peripheral sensory neurons (By similarity). Mediates ubiquitination and subsequent proteasomal degradation of TSC2/tuberin. Independently of the E3 ubiquitin-protein ligase activity, also acts as a guanosine exchange factor (GEF) for RAN in neurons of dorsal root ganglia. May function as a facilitator or regulator of transcriptional activation by MYC. Acts in concert with HUWE1 to regulate the circadian clock gene expression by promoting the lithium-induced ubiquination and degradation of NR1D1.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.