SCUBA

SNRPF — Small nuclear ribonucleoprotein polypeptide F

SNRPF belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SNRPF's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsSpliceosome snRNP
RNA processing
CHCHD2, COX7B, GHITM, MAGOH, PPIA, RAN, SNRPB, SNRPC +4 moreView in SCUBA
CD8⁺ T cellsMitochondrial Housekeeping
Housekeeping
AURKAIP1, CCDC167, ELOC, ITGB1BP1, MRPL57, NDUFB7, PDCD5, RBM17 +2 moreView in SCUBA
EndothelialSpliceosome snRNP Assembly
RNA processing & translation
BAX, CBX3, CCT2, CCT4, EIF3I, FGFR1, HNRNPAB, HNRNPC +6 moreView in SCUBA
Gamma-delta T cellsmRNA Splicing & Trafficking
RNA processing & translation
ARF1, ARL6IP1, ARRDC2, B3GNT2, C17orf49, CCDC12, CWC15, DDX39A +19 more
Goblet cellsSpliceosome Assembly
RNA processing & translation
ALYREF, ANAPC11, BANF1, LSM4, MRPL51, PPIH, PTBP1, RAN +8 moreView in SCUBA
Hematopoietic progenitor cellsRNA Processing Housekeeping
Housekeeping
ATP5MC1, C1QBP, CDK4, DUT, FABP5, HSPE1, LSM5, NDUFAF8 +8 more
Innate lymphoid cellsRNA Splicing Processing
RNA processing & translation
ATP5F1C, CHMP2A, CHMP4A, CYBA, DSTN, DYNC1I2, DYNLRB1, FKBP3 +16 moreView in SCUBA
MacrophagesSpliceosomal snRNP
Cell cycle
ANAPC11, BANF1, CCDC25, CCT8, ERH, FIBP, FKBP3, GLRX5 +30 moreView in SCUBA
Smooth muscle cellsmRNA Splicing Factors
RNA processing & translation
ATF4, BEX3, CLIC4, COX20, HNRNPA0, NAP1L1, NDUFA6, NME4 +7 moreView in SCUBA

About the gene

SynonymsSm-F
Chromosome12: 95858952-95903828
Predicted locationIntracellular, Membrane
Essential geneYes
Protein classEssential proteins, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Function

Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs. As part of the U7 snRNP it is involved in histone 3'-end processing.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.