SCUBA

CBX3 — Chromobox 3

CBX3 belongs to a gene co-expression module in 10 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

CBX3's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsChromatin Remodeling
DNA/chromatin regulation
ANP32B, ATP5IF1, CALM3, COMMD4, HAT1, HMGA1, HMGB1, HNRNPD +9 moreView in SCUBA
CD8⁺ T cellsNuclear RNA Splicing
RNA processing & translation
DNAJC8, HNRNPA3, HNRNPD, HNRNPR, MAZ, PGP, PPIG, PSMD1 +5 moreView in SCUBA
EndothelialSpliceosome snRNP Assembly
RNA processing & translation
BAX, CCT2, CCT4, EIF3I, FGFR1, HNRNPAB, HNRNPC, NAP1L1 +6 moreView in SCUBA
Gamma-delta T cellsCellular Homeostasis
Housekeeping
ANAPC11, BANF1, CALM3, CBX5, COMMD4, DPM2, DUT, FDPS +21 more
Glial cellsHyaluronan-CD44 Remodeling
ECM remodeling
C4orf48, CD44, HAS2, HES4, MIA, PLEKHA4, WWTR1View in SCUBA
Goblet cellsChromatin Organization
chromatin regulation & transcription
HMGB1, HMGB3, HMGN1, HNRNPA2B1, PTMA, STMN1, TPRKBView in SCUBA
Hematopoietic progenitor cellsChromatin Remodeling
Stemness
EIF3A, EIF5B, GDF11, HNRNPM, NMNAT3, RFX7, RIF1, SMARCC1 +4 more
Innate lymphoid cellsRNA Chromatin Regulation
RNA processing & translation
ACADM, AURKAIP1, BUD23, CMC2, COPB1, DNAJA2, DYNC1LI1, G3BP1 +19 moreView in SCUBA
MacrophagesReplication Chromatin Assembly
Cell cycle
ANP32B, CDK4, COPS3, DEK, DNMT1, EMC8, EXOSC8, FDPS +22 moreView in SCUBA
Natural Killer cellshnRNP RNA Processing
RNA processing & translation
GNG5, HNRNPA2B1, HNRNPA3, HNRNPAB, RAN, SLC25A5, YWHAEView in SCUBA

About the gene

SynonymsHP1Hs-gamma
Chromosome7: 26201162-26213607
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins
Molecular functionChromatin regulator, Repressor
Biological processBiological rhythms, Transcription, Transcription regulation

Function

Seems to be involved in transcriptional silencing in heterochromatin-like complexes. Recognizes and binds histone H3 tails methylated at 'Lys-9', leading to epigenetic repression. May contribute to the association of the heterochromatin with the inner nuclear membrane through its interaction with lamin B receptor (LBR). Involved in the formation of functional kinetochore through interaction with MIS12 complex proteins. Contributes to the conversion of local chromatin to a heterochromatin-like repressive state through H3 'Lys-9' trimethylation, mediates the recruitment of the methyltransferases SUV39H1 and/or SUV39H2 by the PER complex to the E-box elements of the circadian target genes such as PER2 itself or PER1. Mediates the recruitment of NIPBL to sites of DNA damage at double-strand breaks (DSBs).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.