SCUBA

SOX4 — SRY-box transcription factor 4

SOX4 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SOX4's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsInflammatory activation
Immune regulation
ACP5, B2M, CALCOCO1, CCNG2, CHST11, CORO1A, HLA-A, IL32 +10 moreView in SCUBA
CD8⁺ T cellsTCR Activation & Modulation
Exhaustion
ADGRG1, AKAP5, CTLA4, ENTPD1, ETV1, GALNT2, LAYN, MAST4View in SCUBA
EndothelialEndothelial Cell Migration
migration & adhesion
CISD1, CTHRC1, GALNT1, MARCKS, MARCKSL1, NARF, PHLDB2, RHOJ +5 moreView in SCUBA
Glial cellsHypoxia mTOR Stress
Stress
AMD1, CDKN2AIP, CITED2, DDIT4, HEXIM1, HSPA2, IFRD1, INTS6 +3 moreView in SCUBA
Goblet cellsProgenitor Identity Program
Epithelial development
APEX1, FAM89B, MAP4K4, MEX3A, NOTCH1, NREP, RNF186, TEAD2 +3 moreView in SCUBA
Innate lymphoid cellsILC3 identity
Differentiation
BHLHE40, BRD4, CASK, CITED2, GLUL, GNAS, HECA, IGFBP7 +19 moreView in SCUBA
Lymphatic endothelialHypoxic Stress Response
Stress
CCL2, CHMP1B, ID2, IER3, IFRD1, RRAD, VEGFAView in SCUBA
Smooth muscle cellsIFN-gamma/NF-kB Response
Inflammation
ATP6V0B, CCDC71L, CFLAR, CHI3L2, EVA1B, GBP1, GBP2, HSPA8 +11 moreView in SCUBA

About the gene

Chromosome6: 21593751-21598619
Predicted locationIntracellular
Essential geneNo
Protein classDisease related genes, Human disease related genes, Predicted intracellular proteins, Transcription factors
Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Function

Transcriptional activator that binds with high affinity to the T-cell enhancer motif 5'-AACAAAG-3' motif. Required for IL17A-producing Vgamma2-positive gamma-delta T-cell maturation and development, via binding to regulator loci of RORC to modulate expression (By similarity). Involved in skeletal myoblast differentiation by promoting gene expression of CALD1.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.