SCUBA

GABARAPL1 — GABA type A receptor associated protein like 1

GABARAPL1 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

GABARAPL1's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsTNF/NF-kB activation
TCR/AP1/NFKb pathway
BIRC3, DUSP10, HNRNPC, LUZP1, MDFIC, NSUN6, PMAIP1, RBBP8 +6 moreView in SCUBA
EndothelialArterial EC Homeostasis
Endothelial cell development
APOL3, BMX, EXOC6, FAXDC2, FTH1, GAS6, GIMAP1, GIMAP4 +10 moreView in SCUBA
FibroblastsInflammatory Fibroblast Activation
Inflammatory
ATP2A2, BAMBI, C5AR2, CRISPLD2, CSNK1E, CTNNB1, DLC1, ETS2 +11 moreView in SCUBA
Gamma-delta T cellsLate Activation Autophagy
Immune regulation
BCL3, BRD1, CREM, DUSP8, FAM177A1, FBXO33, FOSL2, IRF2BP2 +19 more
Lymphatic endothelialNF-κB Autophagy Regulation
Immune regulation
CLIC2, LGMN, NFKBIB, OSER1, PRRG4, RELB, RNF114, SQSTM1 +3 moreView in SCUBA
MacrophagesLipid-Sensing Transcriptional
Lipid metabolism
ANKLE2, BAIAP2, C19orf25, C1orf52, COX19, CWC25, DEDD2, DNTTIP2 +29 moreView in SCUBA
MonocytesWnt/AP-1 Activation
Inflammatory
B4GALT1, BZW1, CHD1, CTNNB1, ETF1, FOSL2, GPCPD1, PNPLA8 +2 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Activation
Inflammation
DUSP5, DUSP8, ELL2, IRF2BP2, MAFF, NAMPT, NFKB1, PER1 +8 more
Natural Killer cellsGlucocorticoid Response
Immune regulation
AREG, ARF6, BCLAF1, BEX2, BEX4, ELF1, ELL2, EPC1 +11 moreView in SCUBA

About the gene

SynonymsAPG8L, ATG8B, ATG8L, gec1
Chromosome12: 10212458-10223128
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Biological processAutophagy, Host-virus interaction

Function

Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. While LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation. Through its interaction with the reticulophagy receptor TEX264, participates in the remodeling of subdomains of the endoplasmic reticulum into autophagosomes upon nutrient stress, which then fuse with lysosomes for endoplasmic reticulum turnover.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.