SCUBA

ELL2 — Elongation factor for RNA polymerase II 2

ELL2 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

ELL2's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsPlasma cell secretory
B cell maturation
AARSD1, ATP1B3, BCAS2, CHMP1B, DNAJB9, ETV3, IDI1, MEPCE +9 moreView in SCUBA
CD4⁺ T cellsTCR early activation
TCR/AP1/NFKb pathway
ARIH1, BRAF, CCNT1, CLEC2D, EMD, FAM133B, FOSL2, JOSD1 +11 moreView in SCUBA
FibroblastsNFAT-cAMP Signaling
Inflammatory
ACKR3, ADGRE2, ANKRD28, CHSY1, CREM, FRMD4A, GPCPD1, RCAN1 +3 moreView in SCUBA
Gamma-delta T cellsChromatin Epigenetic Regulation
DNA/chromatin regulation
ADNP2, ARID4B, CEBPZ, ENSG00000285976, ETF1, HIPK1, JMJD1C, JMY +17 more
Innate lymphoid cellsNF-κB Inflammatory Activation
Inflammation
CDKN1A, CSRNP1, DUSP1, DUSP2, DUSP6, EZR, FOS, ICAM1 +26 moreView in SCUBA
Lymphatic endothelialTBK1-JAK Immune Signaling
Inflammation
ADAM17, AGO2, FNIP2, IQGAP1, JAK1, MAP4K4, NAMPT, NPC1 +6 moreView in SCUBA
MacrophagesInnate Immune Dampening
Innate immunity
DCAF6, FGD4, FKBP5, IRAK3, MAP2K4, MOB3B, PACSIN2, PAPSS2 +10 moreView in SCUBA
MonocytesHypoxia Response
Tissue adaptation
ANPEP, GNA15, HIF1A, NDRG1, RUNX1, SDC4, SLC7A5, SPAG9 +2 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Activation
Inflammation
DUSP5, DUSP8, GABARAPL1, IRF2BP2, MAFF, NAMPT, NFKB1, PER1 +8 more
Natural Killer cellsGlucocorticoid Response
Immune regulation
AREG, ARF6, BCLAF1, BEX2, BEX4, ELF1, EPC1, GABARAPL1 +11 moreView in SCUBA
NeutrophilsNF-κB Inflammatory Transcription
Inflammatory
BID, C9orf72, DENND5A, ETF1, N4BP1, NFE2L2, NFKB1, OXSR1 +10 more

About the gene

SynonymsMRCCAT1
Chromosome5: 95885098-95961851
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Biological processTranscription, Transcription regulation

Function

Elongation factor component of the super elongation complex (SEC), a complex required to increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by the polymerase at multiple sites along the DNA. Component of the little elongation complex (LEC), a complex required to regulate small nuclear RNA (snRNA) gene transcription by RNA polymerase II and III. Plays a role in immunoglobulin secretion in plasma cells: directs efficient alternative mRNA processing, influencing both proximal poly(A) site choice and exon skipping, as well as immunoglobulin heavy chain (IgH) alternative processing. Probably acts by regulating histone modifications accompanying transition from membrane-specific to secretory IgH mRNA expression.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.