SCUBA

VIM — Vimentin

VIM belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

VIM's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsCytoskeleton/motility
migration & adhesion
ANXA2, ANXA4, BHLHE41, C4orf48, CAPG, CAPN2, CIB1, ISCU +11 moreView in SCUBA
CD4⁺ T cellsCytotoxic effector
Cytotoxicity
ADAM23, CTSW, EMP3, FKBP2, IFITM2, IGFBP3, KLRG1, LYAR +11 moreView in SCUBA
EndothelialEndothelial NO Activation
Endothelial cell development
BCL6B, BLOC1S1, CD99, CDH13, COX5A, CREM, DDAH2, DDX46 +8 moreView in SCUBA
FibroblastsComplement-secreting Fibroblast
Immune interaction
ADI1, ARL6IP5, C1R, C2, CYB5A, FCGRT, FTH1, FTL +9 moreView in SCUBA
Glial cellsGlutathione Detoxification
Stress
DAD1, GSTP1, ITM2B, MGST3, RABAC1, RHOC, SRP14, TMA7 +1 moreView in SCUBA
Hematopoietic progenitor cellsCytoskeletal Remodeling
Cytoskeletal
AHNAK, ANXA1, ATP2B1, DPYSL3, FHL1, IDS, MBOAT7, MTURN +5 more
Innate lymphoid cellsNK Homing Circulating
Homing & TEM
ADD3, ANXA1, APOBEC3G, C16orf54, C1orf162, CAPG, CASP4, CAST +37 moreView in SCUBA
MacrophagesInflammatory Monocyte Activation
Inflammatory
ACTN1, ADAM8, AGTRAP, ANXA2, ANXA4, C15orf48, CD44, CD9 +21 moreView in SCUBA
Mucosal-associated invariant T cellAnti-inflammatory Homing
Tissue residence
ANXA1, GPR183, NASP, PNP, TAGLN2, TUBA1C, UBE2A, YWHAQ
NeutrophilsSpecific Granule Release
Degranulation
BMX, CA4, CKAP4, CLEC4D, GPAT3, KBTBD7, MMP9
Smooth muscle cellsMHC-I antigen presentation
Inflammation
B2M, HLA-A, HLA-B, HLA-C, IFI27, NDUFA4, S100A4, S100A6 +2 moreView in SCUBA

About the gene

Chromosome10: 17228241-17237593
Predicted locationIntracellular
Essential geneNo
Protein classDisease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Biological processHost-virus interaction

Function

Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally. Plays a role in cell directional movement, orientation, cell sheet organization and Golgi complex polarization at the cell migration front (By similarity). Protects SCRIB from proteasomal degradation and facilitates its localization to intermediate filaments in a cell contact-mediated manner (By similarity). Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.