SCUBA

APP — Amyloid beta precursor protein

APP belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

APP's module in each cell type

Cell typeModuleShares the module with
EndothelialIntegrin-Actin Adhesion
migration & adhesion
CHD3, CTNNA1, DAG1, DOCK6, FKBP9, FMNL3, ITGA9, ITGB1 +6 moreView in SCUBA
FibroblastsLysosomal Biogenesis
Vesicular traficking
ATRAID, CPQ, CST3, GLG1, GRN, HEXA, LGALS3BP, NDN +5 moreView in SCUBA
Goblet cellsIon Transport Homeostasis
Housekeeping
ATP1A1, CAPRIN1, CSDE1, EEF2, MAT2B, SLC12A2, TMEM123, VPS35View in SCUBA
Innate lymphoid cellsILC Transcription Factor Program
Differentiation
DCTN2, DEF6, GRAMD1A, GRHPR, HSD17B12, HSPB1, ILK, KDELR1 +11 moreView in SCUBA
Lymphatic endothelialEndosomal Vesicle Trafficking
Housekeeping
ADAM10, APC, ATP9A, GLG1, MTR, NCOA3, PCNX4, PDCD6IP +5 moreView in SCUBA
MacrophagesHypoxia Stress Response
Stress
ACE, AMPD3, ASPH, BCAT1, BEX3, BHLHE41, BNIP3, CAPN2 +34 moreView in SCUBA
NeutrophilsProteostasis RNA Metabolism
Housekeeping
HNRNPD, MTDH, PSMB7, RIF1, SLC44A1, SRSF11, STT3B, TMEM87A
PericytesGolgi Vesicular Trafficking
Vesicular traficking
CLIC4, CTNNA1, EMP2, GNAS, PAK2, PTTG1IP, SERINC3, TGOLN2 +1 moreView in SCUBA
Smooth muscle cellsMitochondrial Housekeeping
Housekeeping
COX7A2L, EIF5B, GABARAPL2, LAMTOR4, NDUFAB1, PGAM1, SPCS2, TMEM14C +2 moreView in SCUBA

About the gene

SynonymsAD1, alpha-sAPP
Chromosome21: 25880535-26171128
Predicted locationIntracellular, Membrane, Secreted
Essential geneNo
Protein classDisease related genes, FDA approved drug targets, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins, Predicted secreted proteins, Transporters
Molecular functionHeparin-binding, Protease inhibitor, Serine protease inhibitor
Biological processApoptosis, Cell adhesion, Endocytosis, Notch signaling pathway

Function

Functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Interaction between APP molecules on neighboring cells promotes synaptogenesis. Involved in cell mobility and transcription regulation through protein-protein interactions. Can promote transcription activation through binding to APBB1-KAT5 and inhibits Notch signaling through interaction with Numb. Couples to apoptosis- inducing pathways such as those mediated by G(o) and JIP. Inhibits G(o) alpha ATPase activity (By similarity). Acts as a kinesin I membrane receptor, mediating the axonal transport of beta-secretase and presenilin 1 (By similarity). By acting as a kinesin I membrane receptor, plays a role in axonal anterograde transport of cargo towards synapses in axons. Involved in copper homeostasis/oxidative stress through copper ion reduction. In vitro, copper-metallated APP induces neuronal death directly or is potentiated through Cu(2+)-mediated low-density lipoprotein oxidation. Can regulate neurite outgrowth through binding to components of the extracellular matrix such as heparin and collagen I and IV. The splice isoforms that contain the BPTI domain possess protease inhibitor activity. Induces a AGER-dependent pathway that involves activation of p38 MAPK, resulting in internalization of amyloid-beta peptide and leading to mitochondrial dysfunction in cultured cortical neurons. Provides Cu(2+) ions for GPC1 which are required for release of nitric oxide (NO) and subsequent degradation of the heparan sulfate chains on GPC1. Amyloid-beta peptides are lipophilic metal chelators with metal-reducing activity. Bind transient metals such as copper, zinc and iron. In vitro, can reduce Cu(2+) and Fe(3+) to Cu(+) and Fe(2+), respectively. Amyloid-beta peptides bind to lipoproteins and apolipoproteins E and J in the CSF and to HDL particles in plasma, inhibiting metal-catalyzed oxidation of lipoproteins. Promotes both tau aggregation and TPK II-mediated phosphorylation. Interaction with overexpressed HADH2 leads to oxidative stress and neurotoxicity. Also binds GPC1 in lipid rafts. More effective reductant than amyloid-beta protein 40. May activate mononuclear phagocytes in the brain and elicit inflammatory responses. Appicans elicit adhesion of neural cells to the extracellular matrix and may regulate neurite outgrowth in the brain. The gamma-CTF peptides as well as the caspase-cleaved peptides, including C31, are potent enhancers of neuronal apoptosis

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.