SCUBA

NEDD9 — Neural precursor cell expressed, developmentally down-regulated 9

NEDD9 belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

NEDD9's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsTCR Activation Signaling
TCR/AP1/NFKb pathway
AKNA, ATP6V1A, BCL2L11, KIF20B, LAX1, NAA50, NPC1, PRKAR1A +6 moreView in SCUBA
EndothelialNotch Arterial Identity
Endothelial cell development
ADAMTS1, ARID5A, BTG1, BTG2, CRIP1, DLL4, EFNA1, EFNB2 +14 moreView in SCUBA
EnterocytesEpithelial junction polarity
Migration & adhesion
CXADR, FRMD3, IL13RA1, KIF3B, MARVELD3, PTPRD, RAB6A, SLC41A2 +5 moreView in SCUBA
Gamma-delta T cellsActivation Stress Response
Stress
ARHGAP9, ARHGEF12, ATF3, ATP6V0A2, GALNT6, GPR18, HIC1, HMCES +12 more
Goblet cellsStress Survival Response
Stress
EPHA2, ERRFI1, EZR, KLF6, LDLR, LMNA, MCL1, SQSTM1 +3 moreView in SCUBA
Mucosal-associated invariant T cellTissue Residency Regulation
Tissue residence
ABCC1, ANKRD28, ARHGEF7, CA2, CDV3, CHD7, CYTIP, IL18R1 +4 more
Natural Killer cellsResident NK program
Gut residency
ACP5, CDH17, CHCHD10, CKLF, ID3, KRT81, KRT86, RGL4 +2 moreView in SCUBA
PericytesArterial Notch Signaling
Developmental
BCL6B, CYTH1, DLL4, EFNB2, HEY1, MSX1, PNP, SGK1 +1 moreView in SCUBA

About the gene

SynonymsCAS-L, CASS2, HEF1
Chromosome6: 11183298-11382348
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins
Biological processCell adhesion, Cell cycle, Cell division, Growth regulation, Mitosis

Function

Scaffolding protein which plays a central coordinating role for tyrosine-kinase-based signaling related to cell adhesion. As a focal adhesion protein, plays a role in embryonic fibroblast migration (By similarity). May play an important role in integrin beta-1 or B cell antigen receptor (BCR) mediated signaling in B- and T-cells. Integrin beta-1 stimulation leads to recruitment of various proteins including CRKL and SHPTP2 to the tyrosine phosphorylated form. Promotes adhesion and migration of lymphocytes; as a result required for the correct migration of lymphocytes to the spleen and other secondary lymphoid organs. Plays a role in the organization of T-cell F- actin cortical cytoskeleton and the centralization of T-cell receptor microclusters at the immunological synapse (By similarity). Negatively regulates cilia outgrowth in polarized cysts (By similarity). Modulates cilia disassembly via activation of AURKA-mediated phosphorylation of HDAC6 and subsequent deacetylation of alpha-tubulin. Positively regulates RANKL-induced osteoclastogenesis (By similarity). Required for the maintenance of hippocampal dendritic spines in the dentate gyrus and CA1 regions, thereby involved in spatial learning and memory (By similarity).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.