SCUBA

VAMP8 — Vesicle associated membrane protein 8

VAMP8 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

VAMP8's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsActin Cytoskeleton
Cytoskeletal
ACTB, ACTG1, ACTR3, ARPC1B, ARPC2, ARPC4, ARPC5, BRK1 +14 moreView in SCUBA
CD4⁺ T cellsInflammatory activation
Immune regulation
ACP5, B2M, CALCOCO1, CCNG2, CHST11, CORO1A, HLA-A, IL32 +10 moreView in SCUBA
CD8⁺ T cellsGut Tissue Residency
Gut residence
ALOX5AP, C4orf3, CAPN2, CD164, CD3D, CD7, CD99, CLIC3 +9 moreView in SCUBA
EndothelialCaveolae-mediated Transcytosis
Metabolite transfer
ADIPOR2, CAV1, CAV2, CCDC85A, CD320, EEPD1, EMP2, ENAH +19 moreView in SCUBA
EnterocytesLysosomal/ferritin housekeeping
Housekeeping
APLP2, CD164, CRIP1, CST3, EDF1, FTH1, FTL, GPA33 +5 moreView in SCUBA
Gamma-delta T cellsT Cell Homeostasis
Housekeeping
ATP6V0E1, CALHM2, CNPY2, CSK, CSTB, DAD1, FERMT3, GTF2H5 +11 more
Hematopoietic progenitor cellsErythroid Glycolysis
Erythropoietic
CMBL, ENO1, GAPDH, GYPC, LMO2, LY6E, MAP7, NENF +3 more
Innate lymphoid cellsILC-1 identity
Differentiation
ABRACL, BLOC1S1, C19orf53, CD52, DAD1, FUCA2, GMFG, HMGN3 +20 moreView in SCUBA
MacrophagesInflammasome Oxidative Stress
Inflammatory
ABI3, ADISSP, AKR1A1, ARHGDIB, ARPC1B, ASCL2, BLVRA, C1orf54 +33 moreView in SCUBA
Mucosal-associated invariant T cellER & Mitochondrial Assembly
Protein processing & ER
ANAPC11, ARRDC1, ATP5MC1, COA3, CSTB, DECR1, GSTK1, HINT2 +9 more
NeutrophilsTranslation Initiation
Housekeeping
EIF1AX, EIF3A, HNRNPA1, NAP1L1, NCL, PPIA, PTMA, RPN2 +1 more

About the gene

SynonymsEDB, VAMP-8
Chromosome2: 85561562-85582031
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classPredicted intracellular proteins, Predicted membrane proteins, Transporters
Biological processAntiviral defense, Autophagy, Protein transport, Transport

Function

SNAREs, soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes. SNAREs localized on opposing membranes assemble to form a trans-SNARE complex, an extended, parallel four alpha-helical bundle that drives membrane fusion. VAMP8 is a SNARE involved in autophagy through the direct control of autophagosome membrane fusion with the lysososome membrane via its interaction with the STX17-SNAP29 binary t- SNARE complex. Also required for dense-granule secretion in platelets. Also plays a role in regulated enzyme secretion in pancreatic acinar cells (By similarity). Involved in the abscission of the midbody during cell division, which leads to completely separate daughter cells (By similarity). Involved in the homotypic fusion of early and late endosomes (By similarity). Also participates in the activation of type I interferon antiviral response through a TRIM6-dependent mechanism.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.