SCUBA

LIMS1 — LIM zinc finger domain containing 1

LIMS1 belongs to a gene co-expression module in 10 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

LIMS1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsActin cytoskeleton remodeling
Cytoskeletal
ACTR2, BASP1, CAPZA1, CDV3, EIF3A, FAM107B, GRB2, HCLS1 +9 moreView in SCUBA
CD4⁺ T cellsMAF regulatory program
Immune regulation
AKAP13, ARID4B, DTHD1, FYN, IKZF3, ISCU, LIMA1, MAF +12 moreView in SCUBA
EndothelialVenous EC Identity
Endothelial cell development
ALDH1A1, ALDH3A2, ASGR1, ATP9A, BMP2K, DSP, FAM107B, KIAA1522 +12 moreView in SCUBA
FibroblastsActin Cytoskeletal Organization
Cytoskeletal
ACP1, AKR7A2, ARL3, CAPZB, DERL1, GDE1, LEPROTL1, NPTN +8 moreView in SCUBA
Innate lymphoid cellsNK JAK3 Signaling
activation
ANKRD44, APLP2, ATP8B4, CALCOCO2, ERLEC1, FLOT1, FUT8, FYCO1 +10 moreView in SCUBA
Lymphatic endothelialIntegrin Focal Adhesion
migration & adhesion
APLP2, ATP5F1A, ATP5PB, DEK, ITGB1, MCFD2, NPC2, NUCKS1 +4 moreView in SCUBA
MacrophagesRAS-MAPK Signaling
Housekeeping
ARF4, ATG12, CAMTA1, CDC37, CHMP4B, ETFA, GLA, HMGA1 +26 moreView in SCUBA
Natural Killer cellsNK Immune Checkpoint
Immune regulation
AKAP13, CHD1, G3BP2, MORF4L2, P2RY10, PTPN22, RANBP2, SAMSN1 +1 moreView in SCUBA
PericytesBasement Membrane Assembly
ECM production
F2R, FARP1, ITGB1, JAK1, LAMA4, LAMC1, NID1, PELO +1 moreView in SCUBA
Smooth muscle cellsNon-muscle Actomyosin
Cytoskeletal
C1R, CAST, CD63, CLIC1, DYNLL1, FILIP1L, LDHA, MYH9 +4 moreView in SCUBA

About the gene

SynonymsPINCH, PINCH1
Chromosome2: 108533671-108687246
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins
Molecular functionActin-binding

Function

Within the IPP (ILK-PINCH-PARVIN) complex, binds to F-actin, promoting F-actin bundling, a process required to generate force for actin cytoskeleton reorganization and subsequent dynamic cell adhesion events such as cell spreading and migration

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.