SCUBA

NEDD8 — NEDD8 ubiquitin like modifier

NEDD8 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

NEDD8's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsOxidative Phosphorylation
Mitochondrial & OxPhos
ATP5F1D, ATP5ME, COX6A1, COX6B1, COX6C, DNAJC8, NDUFA11, NDUFA4 +6 moreView in SCUBA
CD4⁺ T cellsCytoskeleton & metabolism
Cytoskeletal
ATP5F1D, ATP5MC3, ATP6V0E1, BRK1, CAP1, LCK, MYL6, PPP1R18 +11 moreView in SCUBA
CD8⁺ T cellsActin Cytoskeleton
Cytoskeletal
ACTB, ARF6, ARPC1B, ARPC4, BRK1, CAPZB, CFL1, CORO1A +10 moreView in SCUBA
EndothelialMitochondrial Oxidative Stress
Stress
AGTRAP, AP2M1, ECHS1, ECSCR, EDF1, EIF5A, PARK7, PHPT1 +5 moreView in SCUBA
FibroblastsGeneral Housekeeping
Housekeeping
ATP6V0E1, C19orf53, CLTA, EDF1, ERH, PARK7, SEC11A, SNU13 +4 moreView in SCUBA
Gamma-delta T cellsOxidative Phosphorylation
Mitochondrial & OxPhos
ARPC1B, ARPC4, ATP6V1F, COPE, COX6A1, COX6B1, COX6C, CSNK2B +12 more
Innate lymphoid cellsGlycolysis & OxPhos
Metabolism
ARPC4, ATP6V1F, BRK1, ENO1, FKBP1A, GAPDH, PYURF, SELENOF +2 moreView in SCUBA
Lymphatic endothelialHousekeeping Mixed
Housekeeping
GUK1, LAMTOR4, NDUFB11, PRDX5, RNASEH2C, SSR4, VPS28, ZNHIT1View in SCUBA
MacrophagesProtein Homeostasis Mixed
Housekeeping
ABRACL, ADI1, AP2S1, ATP5F1B, BRK1, CFL1, CHCHD2, CLTA +33 moreView in SCUBA
Mucosal-associated invariant T cellER Glycosylation & Ubiquitin
Protein processing & ER
AIP, ALDOA, ATP5MG, COX6A1, COX6B1, ELOB, FIS1, GAPDH +9 more
Smooth muscle cellsOxPhos & proteasome
Mitochondrial & OxPhos
CD151, CHCHD2, COX5B, EID1, NDUFA11, NDUFB2, NDUFB9, PARK7 +8 moreView in SCUBA

About the gene

SynonymsNedd-8
Chromosome14: 24216857-24232367
Predicted locationIntracellular
Essential geneYes
Protein classCancer-related genes, Essential proteins, Plasma proteins, Predicted intracellular proteins
Biological processUbl conjugation pathway

Function

Ubiquitin-like protein which plays an important role in cell cycle control and embryogenesis via its conjugation to a limited number of cellular proteins, such as cullins or p53/TP53. Attachment of NEDD8 to cullins is critical for the recruitment of E2 to the cullin-RING- based E3 ubiquitin-protein ligase complex, thus facilitating polyubiquitination and proteasomal degradation of cyclins and other regulatory proteins. Attachment of NEDD8 to p53/TP53 inhibits p53/TP53 transcriptional activity. Covalent attachment to its substrates requires prior activation by the E1 complex UBE1C-APPBP1 and linkage to the E2 enzyme UBE2M.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.