SCUBA

RNF19A — Ring finger protein 19A, RBR E3 ubiquitin protein ligase

RNF19A belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

RNF19A's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsChromatin Regulation
DNA/chromatin regulation
AKAP9, ANKRD12, BBX, CHD2, CHD7, IRF1, KDM7A, L3MBTL3 +8 moreView in SCUBA
CD4⁺ T cellsMAF regulatory program
Immune regulation
AKAP13, ARID4B, DTHD1, FYN, IKZF3, ISCU, LIMA1, LIMS1 +12 moreView in SCUBA
CD8⁺ T cellsCD8 Effector Maturation
T cell maturation
AKAP13, ATXN1, CD81, DDX17, DDX3X, ETS1, IKZF3, JUND +8 moreView in SCUBA
Gamma-delta T cellsChromatin Epigenetic Regulation
DNA/chromatin regulation
ADNP2, ARID4B, CEBPZ, ELL2, ENSG00000285976, ETF1, HIPK1, JMJD1C +17 more
Innate lymphoid cellsILC3 identity
Differentiation
BHLHE40, BRD4, CASK, CITED2, GLUL, GNAS, HECA, IGFBP7 +19 moreView in SCUBA
MacrophagesEpigenetic Remodeling
Housekeeping
AFF4, AGO3, AKAP13, ARID4B, ASH1L, CYTH1, ELF1, EPC1 +16 moreView in SCUBA
Mucosal-associated invariant T cellHypoxia-ER Stress
Stress
ANKHD1, ARID1A, ARID4B, ATXN7, CEMIP2, CPD, CTDP1, EIF2AK3 +5 more
Natural Killer cellsEGR2/3 NK Activation
activation
AMD1, CHD4, CRTAM, CSF2, DNAJB9, EGR2, EGR3, GADD45A +4 moreView in SCUBA

About the gene

SynonymsDKFZp566B1346, dorfin, RNF19
Chromosome8: 100257060-100336218
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classEnzymes, Metabolic proteins, Predicted intracellular proteins, Predicted membrane proteins
Molecular functionTransferase
Biological processUbl conjugation pathway

Function

E3 ubiquitin-protein ligase which accepts ubiquitin from E2 ubiquitin-conjugating enzymes UBE2L3 and UBE2L6 in the form of a thioester and then directly transfers the ubiquitin to targeted substrates, such as SNCAIP or CASR. Specifically ubiquitinates pathogenic SOD1 variants, which leads to their proteasomal degradation and to neuronal protection.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.