SCUBA

DDX5 — DEAD-box helicase 5

DDX5 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

DDX5's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsmRNA Splicing
RNA processing
AFF4, ARL6IP1, CALR, CCNL1, CLK1, DDX3X, EIF4A2, HSPA5 +7 moreView in SCUBA
CD4⁺ T cellsmRNA Splicing Processing
RNA processing
ANXA2R, APOL3, BTN3A1, CCNL1, CHCHD7, CMPK1, EIF4A2, EIF5 +7 moreView in SCUBA
CD8⁺ T cellsTc17 Survival Program
Tc17 program
CCL20, IRF1, MAF, MCL1, SAT1, TNFAIP3, TNFRSF4View in SCUBA
Glial cellsRNA Splicing Processing
RNA processing & translation
DDX3X, HNRNPA2B1, HNRNPAB, HNRNPDL, HNRNPH1, MAFB, NES, RND3 +2 moreView in SCUBA
Goblet cellsAdhesion & Transport
Cytoskeletal
AHCYL1, CHMP1B, DYNC1H1, DYNC1LI2, EIF4G2, ITGB1, PTTG1IP, SLC38A1 +4 moreView in SCUBA
Innate lymphoid cellsIntegrated Stress Response
Stress
AMD1, ATF4, CYCS, DNAJB6, EIF1, GPBP1, HERPUD1, HNRNPH1 +3 moreView in SCUBA
MacrophagesPre-mRNA Splicing
Housekeeping
BCLAF1, CSNK1A1, DDX3X, EWSR1, FUS, HNRNPH1, HNRNPH3, HNRNPU +11 moreView in SCUBA
Mucosal-associated invariant T cellmRNA Processing Translation
RNA processing & translation
ACTN4, CDC42SE1, CSDE1, EIF4G1, GDI1, HNRNPU, MSN, NCL +7 more
Smooth muscle cellsActin Cytoskeletal Scaffold
Cytoskeletal
ACTN4, ATP2B4, ATRX, DLGAP4, EIF4G2, FAT1, GNAI2, JAK1 +13 moreView in SCUBA

About the gene

SynonymsG17P1, HLR1, p68
Chromosome17: 64498254-64508199
Predicted locationIntracellular
Essential geneYes
Protein classCancer-related genes, Enzymes, Essential proteins, Plasma proteins, Predicted intracellular proteins
Molecular functionHelicase, Hydrolase, RNA-binding
Biological processBiological rhythms, mRNA processing, mRNA splicing, Transcription, Transcription regulation

Function

Involved in the alternative regulation of pre-mRNA splicing; its RNA helicase activity is necessary for increasing tau exon 10 inclusion and occurs in a RBM4-dependent manner. Binds to the tau pre- mRNA in the stem-loop region downstream of exon 10. The rate of ATP hydrolysis is highly stimulated by single-stranded RNA. Involved in transcriptional regulation; the function is independent of the RNA helicase activity. Transcriptional coactivator for androgen receptor AR but probably not ESR1. Synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and involved in skeletal muscle differentiation. Transcriptional coactivator for p53/TP53 and involved in p53/TP53 transcriptional response to DNA damage and p53/TP53- dependent apoptosis. Transcriptional coactivator for RUNX2 and involved in regulation of osteoblast differentiation. Acts as a transcriptional repressor in a promoter-specific manner; the function probably involves association with histone deacetylases, such as HDAC1. As component of a large PER complex is involved in the inhibition of 3' transcriptional termination of circadian target genes such as PER1 and NR1D1 and the control of the circadian rhythms.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.