SCUBA

NCL — Nucleolin

NCL belongs to a gene co-expression module in 13 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

NCL's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsNF-kB activation
TCR/AP1/NFKb pathway
ABCF1, BCL2A1, BUD23, BZW2, CALR, CEBPZ, DDX21, DENND4A +21 moreView in SCUBA
CD8⁺ T cellsPre-mRNA Splicing
RNA processing & translation
BRD2, EIF3A, FUS, HNRNPU, HSPA9, PNN, RBM25, RBM39 +5 moreView in SCUBA
EndothelialDNA Damage Repair
DNA/chromatin regulation
APPL1, GPAA1, HMGB1, HNRNPM, HNRNPR, NAP1L4, PRDX3, PRKDC +7 moreView in SCUBA
EnterocytesNucleolar RNA-binding
RNA processing & translation
HMGB1, HMGN2, HNRNPA1, HNRNPA2B1, HNRNPA3, HSP90AA1, HSP90AB1, NPM1 +2 moreView in SCUBA
Gamma-delta T cellsHippo Pathway Signaling
TCR Signaling
ADAR, ARL8B, BAZ2A, CASC3, CCDC85C, CCNK, CDC73, CDK12 +24 more
Glial cellsGlial RNA Homeostasis
RNA processing & translation
ATRX, DYNC1H1, GTF2I, RBM25, SCN9A, SRSF11, SYNMView in SCUBA
Hematopoietic progenitor cellsDNA Damage Repair
Housekeeping
GSPT1, HNRNPR, LARS1, MSH6, PARP1, PRKDC, SUPT16H
Innate lymphoid cellsRNA-binding & Splicing
RNA processing & translation
CALM1, DYNLL1, FUS, HNRNPA2B1, HNRNPAB, NUDC, PPIG, SAP18 +4 moreView in SCUBA
MacrophagesRNA Processing & Repair
Housekeeping
BRD7, CCDC59, CCT4, CCT6A, CNDP2, EIF3J, EIF5B, EMC4 +31 moreView in SCUBA
Mucosal-associated invariant T cellmRNA Processing Translation
RNA processing & translation
ACTN4, CDC42SE1, CSDE1, DDX5, EIF4G1, GDI1, HNRNPU, MSN +7 more
Natural Killer cellsMetabolic Activation
Metabolism
FABP5, LDHA, NOP56, POMP, PTMA, SERBP1, SLC25A3, SNRPG +2 moreView in SCUBA
NeutrophilsTranslation Initiation
Housekeeping
EIF1AX, EIF3A, HNRNPA1, NAP1L1, PPIA, PTMA, RPN2, SET +1 more
Smooth muscle cellsRibonucleoprotein & translation
RNA processing & translation
CRYAB, CYB5R3, EEF1B2, HMGB1, HNRNPC, LAPTM4A, MAGED2, NACA +5 moreView in SCUBA

About the gene

SynonymsC23, Nsr1
Chromosome2: 231453531-231483641
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Plasma proteins, Predicted intracellular proteins
Molecular functionDNA-binding, RNA-binding

Function

Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG- 3' repeats more tightly than the telomeric single-stranded DNA 5'- TTAGGG-3' repeats

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.