SCUBA

SEM1 — SEM1 26S proteasome subunit

SEM1 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SEM1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsOxidative Phosphorylation
Mitochondrial & OxPhos
ANAPC11, AP2S1, ATP5F1A, ATP5F1C, COPE, COX8A, GAPDH, GNG5 +7 moreView in SCUBA
CD4⁺ T cellsProteostasis OxPhos
Housekeeping
AIP, ARPC1B, ATP6V1F, C4orf48, CHMP2A, IL2RG, NDUFA13, NDUFB10 +6 moreView in SCUBA
CD8⁺ T cellsMitochondrial OxPhos
Mitochondrial & OxPhos
COX6B1, COX6C, COX7A2, COX7B, DBI, ELOB, LSM7, NDUFB2 +5 moreView in SCUBA
Endothelialp53 Stress Response
Stress
BACE2, COPS9, NT5C, OST4, PDLIM1, PGLS, POLR2L, RFXANK +1 moreView in SCUBA
FibroblastsCullin-RING Ubiquitin Ligase
Housekeeping
ARPC3, LAMTOR5, MRPL51, NDUFA11, NDUFB11, NDUFC2, OST4, RBX1 +3 moreView in SCUBA
Gamma-delta T cellsATP Synthase Complex
Mitochondrial & OxPhos
ATP5F1D, ATP5F1E, ATP5MC2, ATP5MC3, ATP5MF, ATP5MG, ATP5MK, ATP5PD +23 more
Glial cellsMitochondrial Housekeeping
Mitochondrial & OxPhos
ATP5F1D, ATP6V1G1, COX7C, GNG5, RAN, SH3BGRL3, ST3GAL4, SUB1 +3 moreView in SCUBA
Innate lymphoid cellsInnate Inflammatory Activation
Inflammation
ARL6IP5, BST2, CD2, CD63, FTL, HMGB1, ITM2B, MGST3 +7 moreView in SCUBA
MacrophagesProteasome UPS
Housekeeping
ACP1, ARPC5L, ATP6V1G1, AURKAIP1, C19orf53, CHMP2A, CIAO2B, CIB1 +31 moreView in SCUBA
Mucosal-associated invariant T cellMitochondrial OxPhos
Mitochondrial & OxPhos
ATP5MF, H2AZ1, H4C3, INO80E, LYPLA2, NDUFA3, NDUFB1, SGSM3 +3 more
Smooth muscle cellsOxPhos & proteasome
Mitochondrial & OxPhos
CD151, CHCHD2, COX5B, EID1, NDUFA11, NDUFB2, NDUFB9, NEDD8 +8 moreView in SCUBA

About the gene

SynonymsC7orf76, DSS1, ECD, FLJ42280, PSMD15, SHFD1, Shfdg1, SHFM1, SHSF1
Chromosome7: 96481626-96709880
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Predicted intracellular proteins

Function

Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. Component of the TREX-2 complex (transcription and export complex 2), composed of at least ENY2, GANP, PCID2, SEM1, and either centrin CETN2 or CETN3. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery. Binds and stabilizes BRCA2 and is thus involved in the control of R-loop-associated DNA damage and thus transcription- associated genomic instability. R-loop accumulation increases in SEM1- depleted cells.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.