SCUBA

SON — SON DNA and RNA binding protein

SON belongs to a gene co-expression module in 8 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SON's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsmRNA splicing
RNA processing
ANKRD11, ARGLU1, CYBC1, LUC7L3, PLCG2, PNN, SRRM2, TCIRG1 +1 moreView in SCUBA
CD4⁺ T cellsmRNA splicing
RNA processing
ANAPC5, C11orf58, C1orf43, DDX46, DNAJC7, HSPA4, LSM14A, LUC7L3 +8 moreView in SCUBA
CD8⁺ T cellsCD8 Effector Maturation
T cell maturation
AKAP13, ATXN1, CD81, DDX17, DDX3X, ETS1, IKZF3, JUND +8 moreView in SCUBA
Gamma-delta T cellsMitochondrial RNA Processing
Mitochondrial & OxPhos
ABR, DARS1, DENND1C, GTDC1, MRPS30, PDCD4, PMPCB, POLG +11 more
Innate lymphoid cellsPre-mRNA Splicing
RNA processing & translation
AAK1, CDC42SE2, CIB1, DDX46, HNRNPM, KRT10, KTN1, LARP7 +3 moreView in SCUBA
MacrophagesPre-mRNA Splicing
Housekeeping
BCLAF1, CSNK1A1, DDX3X, DDX5, EWSR1, FUS, HNRNPH1, HNRNPH3 +11 moreView in SCUBA
Mucosal-associated invariant T cellER Stress Response
Protein processing & ER
ACADVL, APOL3, GYG1, HLA-F, HSP90B1, LENG8, MAP4K1, PIM1 +4 more
Natural Killer cellsGlucocorticoid Response
Immune regulation
AREG, ARF6, BCLAF1, BEX2, BEX4, ELF1, ELL2, EPC1 +11 moreView in SCUBA

About the gene

SynonymsBASS1, C21orf50, DBP-5, FLJ21099, FLJ33914, KIAA1019, NREBP
Chromosome21: 33543038-33577481
Predicted locationIntracellular
Essential geneYes
Protein classDisease related genes, Essential proteins, Human disease related genes, Plasma proteins, Potential drug targets, Predicted intracellular proteins, Transporters
Molecular functionDNA-binding, RNA-binding
Biological processCell cycle, mRNA processing, mRNA splicing

Function

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that possess weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that possess weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3'. May indirectly repress hepatitis B virus (HBV) core promoter activity and transcription of HBV genes and production of HBV virions. Essential for correct RNA splicing of multiple genes critical for brain development, neuronal migration and metabolism, including TUBG1, FLNA, PNKP, WDR62, PSMD3, PCK2, PFKL, IDH2, and ACY1.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.