SCUBA

HLA-F — Major histocompatibility complex, class I, F

HLA-F belongs to a gene co-expression module in 12 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

HLA-F's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsMHC-I Antigen Presentation
Anti-viral
B2M, BANK1, CD48, CYSLTR1, HLA-A, HLA-B, HLA-C, HLA-E +1 moreView in SCUBA
EndothelialMHC Class I Presentation
Inflammation
B2M, BST2, BTN3A1, BTN3A2, CYSTM1, HLA-A, HLA-B, HLA-C +1 moreView in SCUBA
EnterocytesMHC antigen presentation
Inflammation
B2M, CD74, GSDMB, HLA-A, HLA-B, HLA-C, HLA-DMB, HLA-DPA1 +7 moreView in SCUBA
FibroblastsImmunoproteasome MHC-I
Inflammatory
B2M, BST2, EPSTI1, HLA-A, HLA-B, HLA-C, IFI27, PPA1 +7 moreView in SCUBA
Gamma-delta T cellsInnate Stress Signaling
Inflammation
AKT3, B4GALT4, BCR, BLOC1S4, COL6A2, CREBRF, DGKQ, ELF2 +23 more
Glial cellsType I/II Interferon Response
Inflammation
GBP2, IFI6, IFIT3, ISG15, LY6E, PSMB8, PSMB9, PSME1 +6 moreView in SCUBA
Goblet cellsMHC Class I Antigen Presentation
Immune function
APOL1, APOL6, B2M, HLA-A, HLA-B, HLA-C, HLA-E, IFI27 +4 moreView in SCUBA
Innate lymphoid cellsILC1 Effector Activation
activation
ADAM19, ARHGEF3, BATF, CD151, CDK4, FES, FURIN, IL22 +16 moreView in SCUBA
Lymphatic endothelialAntigen Presentation IFN
Inflammation
ADAR, GPRC5B, KTN1, PARP14, PTTG1IP, SCARB2, TAPBP, TMEM123 +2 moreView in SCUBA
MonocytesIFN-gamma Monocyte Activation
Inflammatory
BLVRA, CYB5A, DRAP1, FCGR1A, GAS6, IFITM3, LGALS9, LILRB1 +3 moreView in SCUBA
Mucosal-associated invariant T cellER Stress Response
Protein processing & ER
ACADVL, APOL3, GYG1, HSP90B1, LENG8, MAP4K1, PIM1, PLEKHF1 +4 more
Smooth muscle cellsType I Interferon
Inflammation
BST2, GBP4, IFI6, IFIT2, IFITM1, ISG15, LY6E, PSMB8 +3 moreView in SCUBA

About the gene

Chromosome6: 29722775-29738528
Predicted locationMembrane
Essential geneNo
Protein classPlasma proteins, Predicted membrane proteins
Biological processImmunity

Function

Non-classical major histocompatibility class Ib molecule postulated to play a role in immune surveillance, immune tolerance and inflammation. Functions in two forms, as a heterotrimeric complex with B2M/beta-2 microglobulin and a peptide (peptide-bound HLA-F-B2M) and as an open conformer (OC) devoid of peptide and B2M (peptide-free OC). In complex with B2M, presents non-canonical self-peptides carrying post- translational modifications, particularly phosphorylated self-peptides. Peptide-bound HLA-F-B2M acts as a ligand for LILRB1 inhibitory receptor, a major player in maternal-fetal tolerance. Peptide-free OC acts as a ligand for KIR3DS1 and KIR3DL2 receptors. Upon interaction with activating KIR3DS1 receptor on NK cells, triggers NK cell degranulation and anti-viral cytokine production. Through interaction with KIR3DL2 receptor, inhibits NK and T cell effector functions. May interact with other MHC class I OCs to cross-present exogenous viral, tumor or minor histompatibility antigens to cytotoxic CD8+ T cells, triggering effector and memory responses. May play a role in inflammatory responses in the peripheral nervous system. Through interaction with KIR3DL2, may protect motor neurons from astrocyte- induced toxicity.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.