SCUBA

NOP56 — NOP56 ribonucleoprotein

NOP56 belongs to a gene co-expression module in 9 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

NOP56's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsUnfolded Protein Response
Protein processing & ER
ARF4, ATF4, DUSP8, HSPA5, IL23A, NLRP3, NRIP3, NXT1 +7 moreView in SCUBA
CD8⁺ T cellsEpigenetic Chromatin Maintenance
DNA/chromatin regulation
BAZ1B, DDX46, DNMT1, HNRNPAB, NASP, SET, SMC1A, SMC3 +2 moreView in SCUBA
EndothelialmRNA Splicing
RNA processing & translation
DIAPH1, EIF4A3, FUBP1, GLRX5, HNRNPA2B1, HNRNPA3, HNRNPD, KHDRBS1 +8 moreView in SCUBA
Gamma-delta T cellsmRNA Splicing
RNA processing & translation
ARHGDIA, DDX27, DDX59, EIF2AK1, EWSR1, FBXL5, GNL1, GTF2F1 +14 more
Goblet cellsPyroptosis Stress Response
Stress
ADAM15, AURKAIP1, CDC37, CENPX, COMTD1, DDX39A, EEF1D, GSDMD +6 moreView in SCUBA
Hematopoietic progenitor cellsRibosome Biogenesis
Housekeeping
DDX21, DKC1, GNL3, HNRNPAB, LRPPRC, NOLC1, NOP58, PA2G4 +2 more
Innate lymphoid cellsHeat Shock Response
Stress
AHSA1, ANKRD37, DEDD2, DNAJB1, DNAJB4, HSP90AA1, HSP90AB1, HSPA1A +9 moreView in SCUBA
MacrophagesReplication Chromatin Assembly
Cell cycle
ANP32B, CBX3, CDK4, COPS3, DEK, DNMT1, EMC8, EXOSC8 +22 moreView in SCUBA
Natural Killer cellsMetabolic Activation
Metabolism
FABP5, LDHA, NCL, POMP, PTMA, SERBP1, SLC25A3, SNRPG +2 moreView in SCUBA

About the gene

SynonymsNOL5A, SCA36
Chromosome20: 2652593-2658393
Predicted locationIntracellular
Essential geneYes
Protein classDisease related genes, Essential proteins, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Molecular functionRibonucleoprotein
Biological processRibosome biogenesis

Function

Involved in the early to middle stages of 60S ribosomal subunit biogenesis. Required for the biogenesis of box C/D snoRNAs such U3, U8 and U14 snoRNAs. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Core component of box C/D small nucleolar ribonucleoprotein (snoRNP) complexes that function in methylation of multiple sites on ribosomal RNAs (rRNAs) and messenger RNAs (mRNAs).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.