SCUBA

SERBP1 — SERPINE1 mRNA binding protein 1

SERBP1 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SERBP1's module in each cell type

Cell typeModuleShares the module with
CD4⁺ T cellsProteasome translation
Housekeeping
ADRM1, CD2BP2, CDV3, CST7, EHBP1L1, EIF3J, ENO1, HSBP1 +5 moreView in SCUBA
CD8⁺ T cellsPre-mRNA Splicing
RNA processing & translation
BRD2, EIF3A, FUS, HNRNPU, HSPA9, NCL, PNN, RBM25 +5 moreView in SCUBA
FibroblastsER-Golgi Trafficking
Vesicular traficking
ANXA5, ARF1, ATP6AP2, MORF4L1, MTDH, OCIAD1, PTGES3, RAB2A +6 moreView in SCUBA
Gamma-delta T cellsmRNA Splicing
RNA processing & translation
ARHGDIA, DDX27, DDX59, EIF2AK1, EWSR1, FBXL5, GNL1, GTF2F1 +14 more
Goblet cellshnRNP RNA Processing
RNA processing & translation
CCT2, HNRNPAB, HNRNPD, HNRNPR, ILF3, IMPA2, SET, TAF15View in SCUBA
Hematopoietic progenitor cellsRibosome Biogenesis
Housekeeping
DDX21, DKC1, GNL3, HNRNPAB, LRPPRC, NOLC1, NOP56, NOP58 +2 more
Innate lymphoid cellsProteasome ER Proteostasis
Protein processing & ER
ATP5MC1, ATP5PF, DBI, GNG5, GTF3C6, HNRNPK, IL4I1, MANF +19 moreView in SCUBA
MacrophagesRNA Processing & Repair
Housekeeping
BRD7, CCDC59, CCT4, CCT6A, CNDP2, EIF3J, EIF5B, EMC4 +31 moreView in SCUBA
Natural Killer cellsMetabolic Activation
Metabolism
FABP5, LDHA, NCL, NOP56, POMP, PTMA, SLC25A3, SNRPG +2 moreView in SCUBA
PericytesmRNA Stability Regulation
Housekeeping
ACTR2, EIF4G2, HNRNPK, MTDH, MTPN, QKI, SETView in SCUBA
Smooth muscle cellsActin remodeling
Cytoskeletal
ARPC5, CALM1, GADD45GIP1, GNAS, HNRNPM, KTN1, PLS3View in SCUBA

About the gene

SynonymsCGI-55, CHD3IP, DKFZP564M2423, HABP4L, PAI-RBP1, PAIRBP1
Chromosome1: 67407810-67430415
Predicted locationIntracellular
Essential geneYes
Protein classEssential proteins, Plasma proteins, Predicted intracellular proteins
Molecular functionRNA-binding
Biological processTranslation regulation

Function

Ribosome-binding protein that promotes ribosome hibernation, a process during which ribosomes are stabilized in an inactive state and preserved from proteasomal degradation. Acts via its association with EEF2/eEF2 factor, sequestering EEF2/eEF2 at the A- site of the ribosome and promoting ribosome stabilization and storage in an inactive state (By similarity). May also play a role in the regulation of mRNA stability: binds to the 3'-most 134 nt of the SERPINE1/PAI1 mRNA, a region which confers cyclic nucleotide regulation of message decay. Seems to play a role in PML-nuclear bodies formation.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.