SCUBA

EIF4A3 — Eukaryotic translation initiation factor 4A3

EIF4A3 belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

EIF4A3's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsmRNA splicing factors
RNA processing
CALM1, CALM2, CKS2, CYCS, HNRNPA0, HNRNPA2B1, HNRNPAB, MRPS6 +12 moreView in SCUBA
CD4⁺ T cellsIntegrated Stress Response
Stress
CYCS, DDIT3, EIF1, GTF2B, IFRD1, NASP, PTMA, TUBA1AView in SCUBA
EndothelialmRNA Splicing
RNA processing & translation
DIAPH1, FUBP1, GLRX5, HNRNPA2B1, HNRNPA3, HNRNPD, KHDRBS1, MAGOH +8 moreView in SCUBA
FibroblastsIntegrated Stress Response
Stress
ATF4, BAIAP2, DNAJB6, EIF5, FSCN1, HSP90AB1, HSPD1, HSPE1 +9 moreView in SCUBA
Gamma-delta T cellsAnabolic Activation Response
Housekeeping
ABHD5, ATF4, ATP6V0C, ATP6V1G1, BCL7B, BUD31, CALM2, CHRAC1 +26 more
Glial cellsGlucocorticoid Stress Recovery
Stress
ARL6IP1, FAM43A, MLF1, NABP1, PNRC1, SAP18, SRSF2, TSC22D3 +3 moreView in SCUBA
Innate lymphoid cellsImmediate Early Response
activation
ATF3, BRD2, BTG2, CCNL1, DDX3X, DNAJA1, EGR1, EIF5 +8 moreView in SCUBA
MacrophagesEarly response genes
Inflammatory
ATF3, BAG3, BTG2, CGAS, DNAJA1, DNAJA4, DNAJB1, DNAJB4 +39 moreView in SCUBA
MonocytesNR4A Immediate-Early
Inflammatory
ANKRD37, CHMP1B, CKS2, CYCS, ETV3, GLA, NR4A1, NR4A2 +4 moreView in SCUBA
Mucosal-associated invariant T cellIntegrated Stress Response
Stress
ATF4, EIF5, FAM53C, IFRD1, MARCKSL1, MKNK2, ODC1, PLK2 +7 more
Natural Killer cellsER Stress Response
Stress
ARF4, CYCS, DNAJB6, EIF5, GADD45B, HERPUD1, SAP18, SERTAD1View in SCUBA

About the gene

SynonymsDDX48, EIF4AIII, Fal1, KIAA0111
Chromosome17: 80134369-80147151
Predicted locationIntracellular
Essential geneYes
Protein classDisease related genes, Enzymes, Essential proteins, Human disease related genes, Plasma proteins, Potential drug targets, Predicted intracellular proteins, Transporters
Molecular functionHelicase, Hydrolase, RNA-binding
Biological processmRNA processing, mRNA splicing, mRNA transport, Nonsense-mediated mRNA decay, rRNA processing, Translation regulation, Transport

Function

ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby influencing downstream processes including nuclear mRNA export, subcellular mRNA localization, translation efficiency and nonsense- mediated mRNA decay (NMD). Its RNA-dependent ATPase and RNA-helicase activities are induced by CASC3, but abolished in presence of the MAGOH-RBM8A heterodimer, thereby trapping the ATP-bound EJC core onto spliced mRNA in a stable conformation. The inhibition of ATPase activity by the MAGOH-RBM8A heterodimer increases the RNA-binding affinity of the EJC. Involved in translational enhancement of spliced mRNAs after formation of the 80S ribosome complex. Binds spliced mRNA in sequence-independent manner, 20-24 nucleotides upstream of mRNA exon-exon junctions. Shows higher affinity for single-stranded RNA in an ATP-bound core EJC complex than after the ATP is hydrolyzed. Involved in the splicing modulation of BCL2L1/Bcl-X (and probably other apoptotic genes); specifically inhibits formation of proapoptotic isoforms such as Bcl-X(S); the function is different from the established EJC assembly. Involved in craniofacial development.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.