SCUBA

NR4A1 — Nuclear receptor subfamily 4 group A member 1

NR4A1 belongs to a gene co-expression module in 14 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

NR4A1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsAP-1 Immediate Early
BCR/AP1/NFKb pathway
BTG2, CD69, CD83, DUSP1, EIF1, FOS, FOSB, JUN +7 moreView in SCUBA
CD4⁺ T cellsImmediate Early AP-1
TCR/AP1/NFKb pathway
BTG2, CD69, CDKN1A, DUSP1, EGR1, FOS, FOSB, IER2 +6 moreView in SCUBA
CD8⁺ T cellsImmediate Early Response
Stress
ARRDC3, ATF3, CLK1, EIF4A2, EIF5, GADD45B, IER5, JUN +6 moreView in SCUBA
EndothelialShear Stress Response
Stress
DNAJB1, DUSP1, EGR1, FOS, FOSB, HES1, HSP90AA1, HSPA1A +11 moreView in SCUBA
FibroblastsInflammatory TF Response
Inflammatory
ADAMTS4, CEBPD, CMIP, FOSL2, KLF9, MAT2A, NR4A2, NR4A3 +2 moreView in SCUBA
Glial cellsIntegrated Stress Response
Stress
ATF3, CCNL1, DNAJA1, DUSP1, HSPA8, HSPH1, KLF4, MAFF +2 moreView in SCUBA
Goblet cellsNF-κB Stress Response
Stress
ATF3, CCNL1, EGR3, IER3, MAFF, MYADM, NFKBIA, RHOB +1 moreView in SCUBA
Innate lymphoid cellsImmediate Early Response
activation
ATF3, BRD2, BTG2, CCNL1, DDX3X, DNAJA1, EGR1, EIF4A3 +8 moreView in SCUBA
Lymphatic endothelialDNA Damage Response
DNA/chromatin regulation
BRD2, BTG2, CITED2, H2AX, HBEGF, HEXIM1, INTS6, MAFB +7 moreView in SCUBA
MacrophagesEarly response genes
Inflammatory
ATF3, BAG3, BTG2, CGAS, DNAJA1, DNAJA4, DNAJB1, DNAJB4 +39 moreView in SCUBA
MonocytesNR4A Immediate-Early
Inflammatory
ANKRD37, CHMP1B, CKS2, CYCS, EIF4A3, ETV3, GLA, NR4A2 +4 moreView in SCUBA
Mucosal-associated invariant T cellTCR-Induced Early Response
TCR Signaling
ATF3, EGR1, GLA, HMGCS1, IER3, NUP58, PPP1R15B, RHOB +3 more
Natural Killer cellsNF-κB Activation
Inflammation
ARL5B, BIRC3, CD83, KDM6B, NFKBID, NR4A3, RASGEF1B, RELView in SCUBA
Smooth muscle cellsNR4A-ADAMTS Activation
Stress
ADAMTS1, ADAMTS4, ADAMTS9, AVPR1A, DUSP8, HIPK2, KLF9, MYC +5 moreView in SCUBA

About the gene

SynonymsGFRP1, HMR, N10, NAK-1, NGFIB, NUR77, TR3
Chromosome12: 52022832-52059507
Predicted locationIntracellular
Essential geneNo
Protein classNuclear receptors, Predicted intracellular proteins, Transcription factors
Molecular functionDNA-binding, Receptor
Biological processInflammatory response, Transcription, Transcription regulation

Function

Orphan nuclear receptor. Binds the NGFI-B response element (NBRE) 5'-AAAGGTCA-3'. Binds 9-cis-retinoic acid outside of its ligand- binding (NR LBD) domain. Participates in energy homeostasis by sequestrating the kinase STK11 in the nucleus, thereby attenuating cytoplasmic AMPK activation. Regulates the inflammatory response in macrophages by regulating metabolic adaptations during inflammation, including repressing the transcription of genes involved in the citric acid cycle (TCA) (By similarity). Inhibits NF-kappa-B signaling by binding to low-affinity NF-kappa-B binding sites, such as at the IL2 promoter. May act concomitantly with NR4A2 in regulating the expression of delayed-early genes during liver regeneration (By similarity). Plays a role in the vascular response to injury (By similarity). In the cytosol, upon its detection of both bacterial lipopolysaccharide (LPS) and NBRE-containing mitochondrial DNA released by GSDMD pores during pyroptosis, it promotes non-canonical NLRP3 inflammasome activation by stimulating association of NLRP3 and NEK7

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.