SCUBA

SYNE2 — Spectrin repeat containing nuclear envelope protein 2

SYNE2 belongs to a gene co-expression module in 12 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SYNE2's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsDark-zone GC B-cell
B cell maturation
BRWD1, CCDC144A, CCDC88A, CD38, FGD6, LPP, MYBL1, MYO1E +2 moreView in SCUBA
CD4⁺ T cellsInflammatory effector
Immune regulation
C3AR1, CAST, CLDND1, CMTM3, CREB3L2, EIF4E3, EPB41, FYCO1 +9 moreView in SCUBA
EndothelialEC Barrier Integrity
Endothelial cell development
ABCB1, ADCY4, AQP3, ARHGAP31, CRYBG3, EPS8, FGR, FRYL +14 moreView in SCUBA
EnterocytesEpithelial polarity cytoskeleton
Cytoskeletal
ARHGEF10L, ARID5B, CADPS2, CLMN, DGKH, FAR2, LLGL2, PLEKHA5 +3 moreView in SCUBA
Glial cellsRNA Splicing Regulation
RNA processing & translation
ARGLU1, COL16A1, DDX17, DST, LUC7L3, N4BP2L2, NRBP2, PNISR +2 moreView in SCUBA
Goblet cellsNuclear Architecture
chromatin regulation & transcription
AK3, AKAP1, ATP1B1, ATRX, DSP, KDM5B, MYO6, NET1 +3 moreView in SCUBA
Lymphatic endothelialPre-mRNA Splicing
RNA processing & translation
ARGLU1, ATRX, BPTF, DDX17, DST, LUC7L3, N4BP2L2, NKTR +6 moreView in SCUBA
Mucosal-associated invariant T cellCytoskeletal Migration
migration & adhesion
AGTPBP1, AHNAK, ATP2B4, DIAPH1, FLNA, IQSEC1, ITCH, ITGA4 +8 more
Natural Killer cellsNK Cell Maturation
Differentiation
CAST, GNG2, GZMB, HIPK2, PPP2R5C, PRKCH, STK10, ZEB2View in SCUBA
NeutrophilsDegranulation Trafficking
Degranulation
ATP11A, BIN2, CSGALNACT2, FRY, KDM7A, LPGAT1, PYGL, RAB27A +7 more
PericytesCaveolae Organization
Cytoskeletal
CAV1, CAV2, CAVIN1, PDLIM5, PLEC, PLS3, UTRNView in SCUBA
Smooth muscle cellsPericyte Signature
Development
AC100803.3, CCND1, COX4I2, CPM, ENTPD3, GPR20, GPRIN3, GRIP2 +8 moreView in SCUBA

About the gene

SynonymsDKFZP434H2235, KIAA1011, Nesp2, Nesprin-2, NUA, NUANCE, SYNE-2
Chromosome14: 63761899-64226433
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classDisease related genes, Human disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Molecular functionActin-binding

Function

Multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain the subcellular spatial organization. As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Specifically, SYNE2 and SUN2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. May be involved in nucleus-centrosome attachment. During interkinetic nuclear migration (INM) at G2 phase and nuclear migration in neural progenitors its LINC complex association with SUN1/2 and probable association with cytoplasmic dynein-dynactin motor complexes functions to pull the nucleus toward the centrosome; SYNE1 and SYNE2 may act redundantly. During INM at G1 phase mediates respective LINC complex association with kinesin to push the nucleus away from the centrosome. Involved in nuclear migration in retinal photoreceptor progenitors. Required for centrosome migration to the apical cell surface during early ciliogenesis. Facilitates the relaxation of mechanical stress imposed by compressive actin fibers at the rupture site through its nteraction with SYN2.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.