SCUBA

RTN4 — Reticulon 4

RTN4 belongs to a gene co-expression module in 10 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

RTN4's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsLeukocyte Migration Signaling
migration & adhesion
AP1S3, ARID5B, ATP2B1, CYBB, DOCK8, EMB, GLIPR1, IQGAP1 +5 moreView in SCUBA
EndothelialInflammatory EC Activation
Inflammation
ANGPT2, B3GNT5, BAIAP2, EPHA2, GMFB, HIC1, HMOX1, JUP +6 moreView in SCUBA
FibroblastsActin Cytoskeleton
Cytoskeletal
ACTB, CAPZA2, CFL1, CMTM6, COX8A, KIF5B, MORF4L2, NDUFS5 +6 moreView in SCUBA
Gamma-delta T cellsOsmotic Stress Response
Stress
BAZ1A, BMPR2, HIPK3, HTT, LIX1L, MAPRE2, NFAT5, RALGAPB +6 more
Glial cellsER Membrane Homeostasis
Neroprotection
GNAI2, KHDRBS3, LITAF, SARAF, SBDS, SH3BGRL, SNCA, VAPA +1 moreView in SCUBA
Goblet cellsUbiquitin Protein Homeostasis
Housekeeping
ARPC2, BZW1, CMTM6, CSNK1A1, DAP, EMP2, GNAI3, KIF5B +6 moreView in SCUBA
Innate lymphoid cellsDNA Damage Response
Stress
ANP32E, CCT6A, CLTB, FGFR1OP2, GNL3, HNRNPF, JPT1, MRPS6 +7 moreView in SCUBA
MacrophagesER Membrane Homeostasis
Housekeeping
ATP6V1A, BNIP2, CANX, CAPZA1, CD164, CMTM6, COPB1, EXOC5 +18 moreView in SCUBA
PericytesRNA Splicing Processing
Housekeeping
ENY2, PCBP1, PCBP2, PLSCR1, RBM8A, SLC3A2, SRSF4, WACView in SCUBA
Smooth muscle cellsBasement Membrane Matrix
ECM remodeling
ADH5, C4orf48, EFEMP2, FBXL7, MLXIP, MXRA8, PRNP, VWA1View in SCUBA

About the gene

SynonymsASY, KIAA0886, NOGO, NSP-CL
Chromosome2: 54972187-55112621
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Biological processNeurogenesis

Function

Required to induce the formation and stabilization of endoplasmic reticulum (ER) tubules. They regulate membrane morphogenesis in the ER by promoting tubular ER production. They influence nuclear envelope expansion, nuclear pore complex formation and proper localization of inner nuclear membrane proteins. However each isoform have specific functions mainly depending on their tissue expression specificities (Probable). Developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching. Regulates neurite fasciculation, branching and extension in the developing nervous system. Involved in down-regulation of growth, stabilization of wiring and restriction of plasticity in the adult CNS. Regulates the radial migration of cortical neurons via an RTN4R-LINGO1 containing receptor complex (By similarity). Acts as a negative regulator of central nervous system angiogenesis. Inhibits spreading, migration and sprouting of primary brain microvascular endothelial cells (MVECs). Also induces the retraction of MVECs lamellipodia and filopodia in a ROCK pathway-dependent manner (By similarity). Mainly function in endothelial cells and vascular smooth muscle cells, is also involved in immune system regulation (Probable). Modulator of vascular remodeling, promotes the migration of endothelial cells but inhibits the migration of vascular smooth muscle cells. Regulates endothelial sphingolipid biosynthesis with direct effects on vascular function and blood pressure. Inhibits serine palmitoyltransferase, SPTLC1, the rate-limiting enzyme of the novo sphingolipid biosynthetic pathway, thereby controlling production of endothelial sphingosine-1-phosphate (S1P). Required to promote macrophage homing and functions such as cytokine/chemokine gene expression involved in angiogenesis, arteriogenesis and tissue repair. Mediates ICAM1 induced transendothelial migration of leukocytes such as monocytes and neutrophils and acute inflammation. Necessary for immune responses triggered by nucleic acid sensing TLRs, such as TLR9, is required for proper TLR9 location to endolysosomes. Also involved in immune response to LPS. Plays a role in liver regeneration through the modulation of hepatocytes proliferation (By similarity). Reduces the anti-apoptotic activity of Bcl-xl and Bcl-2. This is likely consecutive to their change in subcellular location, from the mitochondria to the endoplasmic reticulum, after binding and sequestration. With isoform C, inhibits BACE1 activity and amyloid precursor protein processing. Regulates cardiomyocyte apoptosis upon hypoxic conditions (By similarity). With isoform B, inhibits BACE1 activity and amyloid precursor protein processing

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.