SCUBA

LITAF — Lipopolysaccharide induced TNF factor

LITAF belongs to a gene co-expression module in 13 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

LITAF's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsTNF/NF-kB response
BCR/AP1/NFKb pathway
ADGRE5, ATF3, BHLHE40, CHD1, CMTM6, CYLD, DUSP5, FMNL1 +7 moreView in SCUBA
CD8⁺ T cellsAP-1 Early Activation
TCR Signaling
BTG2, CD69, EGR1, FOS, FOSB, IER2, JUNB, LEPROTL1 +5 moreView in SCUBA
EndothelialNF-κB Endothelial Activation
Inflammation
NAMPT, NFKB2, NUAK2, RELB, SBNO2, SELE, SLC35F2, SRGAP1 +5 moreView in SCUBA
FibroblastsER Stress UPR
Stress
ARF4, B4GALT1, BTG3, BZW1, CYCS, EFHD2, ELOC, LDHA +6 moreView in SCUBA
Gamma-delta T cellsCytotoxic Effector Program
cytotoxicity
APMAP, C16orf54, CST7, CTSW, EHD1, HLA-A, HLA-B, HLA-C +8 more
Glial cellsER Membrane Homeostasis
Neroprotection
GNAI2, KHDRBS3, RTN4, SARAF, SBDS, SH3BGRL, SNCA, VAPA +1 moreView in SCUBA
Hematopoietic progenitor cellsMHC-I Antigen Presentation
Myeloid development
ACTB, B2M, CALM2, CAPG, CYBA, EVI2A, EVI2B, FUT7 +10 more
MacrophagesEarly response genes
Inflammatory
ATF3, BAG3, BTG2, CGAS, DNAJA1, DNAJA4, DNAJB1, DNAJB4 +39 moreView in SCUBA
MonocytesTNF-driven Activation
Inflammatory
ATP13A3, CD44, DCUN1D3, DSE, GK, IVNS1ABP, LAMB3, POMP +3 moreView in SCUBA
Mucosal-associated invariant T cellAutophagy & Trafficking
Stress
ATG2A, B3GNT2, BEST1, CEBPZ, CTPS1, ELOA, KANSL2, MTFP1 +6 more
Natural Killer cellsLymphocyte Trafficking
Homing & TEM
BCL6, CTSD, LAPTM5, ORAI1, P2RY8, PTPRJ, RNF166, S1PR1 +3 moreView in SCUBA
NeutrophilsMyeloid Inflammatory Activation
Inflammatory
AQP9, CPD, FPR1, ITGAX, MXD1, NABP1, NAMPT, SDCBP +5 more
Smooth muscle cellsSecondary Response Genes
Stress
ABHD2, BCL6, CSRNP1, ECM2, GADD45A, HRH2, MAT2A, MCL1 +3 moreView in SCUBA

About the gene

SynonymsFLJ38636, PIG7, SIMPLE, TP53I7
Chromosome16: 11547722-11636381
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classDisease related genes, Human disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Function

Plays a role in endosomal protein trafficking and in targeting proteins for lysosomal degradation. Plays a role in targeting endocytosed EGFR and ERGG3 for lysosomal degradation, and thereby helps down-regulate downstream signaling cascades. Helps recruit the ESCRT complex components TSG101, HGS and STAM to cytoplasmic membranes. Probably plays a role in regulating protein degradation via its interaction with NEDD4. May also contribute to the regulation of gene expression in the nucleus. Binds DNA (in vitro) and may play a synergistic role with STAT6 in the nucleus in regulating the expression of various cytokines. May regulate the expression of numerous cytokines, such as TNF, CCL2, CCL5, CXCL1, IL1A and IL10.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.