SCUBA

SBDS — SBDS ribosome maturation factor

SBDS belongs to a gene co-expression module in 12 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SBDS's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsActivation/Migration
BCR/AP1/NFKb pathway
AHNAK, DUSP10, DUSP8, GGA1, GPR183, GPR65, IDS, KLF6 +11 moreView in SCUBA
CD4⁺ T cellsImmediate early activation
TCR/AP1/NFKb pathway
ALG13, AREG, BCAS2, C9orf72, CXCR4, FAM222A, HIP1R, NR4A2 +18 moreView in SCUBA
EndothelialInflammatory Stress Response
Stress
CRK, DLC1, GCLM, IFT20, KRAS, ODC1, SERP1, SERPINH1 +7 moreView in SCUBA
FibroblastsActin Cytoskeleton
Cytoskeletal
ACTB, CAPZA2, CFL1, CMTM6, COX8A, KIF5B, MORF4L2, NDUFS5 +6 moreView in SCUBA
Gamma-delta T cellsTCR Early Activation
TCR Signaling
BTG1, BTG2, CD69, CIRBP, CXCR4, DUSP1, EIF1, ETV3 +15 more
Glial cellsER Membrane Homeostasis
Neroprotection
GNAI2, KHDRBS3, LITAF, RTN4, SARAF, SH3BGRL, SNCA, VAPA +1 moreView in SCUBA
Innate lymphoid cellsmTOR Stress Response
Stress
CEBPB, DDIT3, DDIT4, GLS, ID1, IFRD1, INTS6, JMJD6 +9 moreView in SCUBA
Lymphatic endothelialTranslation Elongation
RNA processing & translation
ANXA2, EEF1A1, EEF2, EIF1, FTH1, FTL, HNRNPA0, HNRNPA1 +2 moreView in SCUBA
MacrophagesER Stress UPR
Stress
ANKRD9, APEH, ARMCX6, BET1L, CALR, CCDC107, COPS2, DNAJB11 +20 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Negative Feedback
Immune regulation
ARL4A, BCAS2, CSRNP1, CXCR4, ENSG00000285976, IDS, ITPRIP, NFKBIA +7 more
Natural Killer cellsTGF-β Antagonism
Immune regulation
IFRD1, IRS2, MOB3A, RBM39, SMAD7, SRSF5, STK17B, ZBTB1 +1 moreView in SCUBA
Smooth muscle cellsOXPHOS Complex I
Mitochondrial & OxPhos
CLTB, COPS6, ETFB, IAH1, MRPS21, NDUFA2, NDUFB10, NDUFC2 +3 moreView in SCUBA

About the gene

SynonymsCGI-97, FLJ10917, SDO1, SDS, SWDS
Chromosome7: 66987680-66995693
Predicted locationIntracellular
Essential geneYes
Protein classCancer-related genes, Disease related genes, Essential proteins, Human disease related genes, Plasma proteins, Predicted intracellular proteins
Biological processRibosome biogenesis

Function

Required for the assembly of mature ribosomes and ribosome biogenesis. Together with EFL1, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating EIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. Required for normal levels of protein synthesis. May play a role in cellular stress resistance. May play a role in cellular response to DNA damage. May play a role in cell proliferation.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.