SCUBA

SDCBP — Syndecan binding protein

SDCBP belongs to a gene co-expression module in 11 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

SDCBP's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsNF-kB activation/survival
BCR/AP1/NFKb pathway
ARL4C, BCL2A1, CCR7, DDX21, GNG2, ICAM1, IRF2BPL, LMNA +9 moreView in SCUBA
CD4⁺ T cellsIL6-STAT3 Signaling
Intercellular communication
ARID5A, ARL6IP1, AZIN1, CCDC66, CDC40, CEMIP2, CHD1, CSNK1D +13 moreView in SCUBA
EndothelialIL33 Alarmin Signaling
Inflammation
ARHGAP26, CHN1, DOC2B, IL33, MCUB, PTAFR, SLC8A1, STMN3 +1 moreView in SCUBA
Gamma-delta T cellsTCR Threshold Regulation
TCR Signaling
AGO2, ATP8A1, AUTS2, CMIP, CNOT6L, CSNK1D, FOXO1, GSPT1 +8 more
Goblet cellsActin Cytoskeletal Remodeling
Cytoskeletal
ACTN4, ACTR3, BHLHE40, CAP1, FHL2, KCNK1, LRP10, SLC7A11 +3 moreView in SCUBA
Innate lymphoid cellsNK ILC Tissue Homing
Homing & TEM
ADGRE5, AKAP13, AREG, ARL4C, ATP1B3, B3GNT7, BTG1, CCDC107 +25 moreView in SCUBA
Lymphatic endothelialmRNA Translation Regulation
RNA processing & translation
BTF3, BZW1, CLIC1, EEF1B2, GAPDH, NPM1, YBX1, YWHAEView in SCUBA
MacrophagesAutophagy Lysosomal Regulation
Lysosomal & pahgocytosis
ADIPOR1, ARL8A, ATOSB, BCL10, BROX, CCR1, CEBPB, CHMP2B +22 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Survival Signaling
Immune regulation
BIRC2, CWC25, GATA3, IL4I1, KPNA2, OAT, OTULIN, PIM2 +4 more
Natural Killer cellsMAPK/AP-1 Signaling
Inflammation
B3GNT7, BRAF, FAM177A1, FOSL2, GPBP1, PDE4B, PIK3R1, RALGAPA1 +4 moreView in SCUBA
NeutrophilsMyeloid Inflammatory Activation
Inflammatory
AQP9, CPD, FPR1, ITGAX, LITAF, MXD1, NABP1, NAMPT +5 more

About the gene

SynonymsMDA-9, SYCL
Chromosome8: 58552924-58582859
Predicted locationIntracellular
Essential geneNo
Protein classPlasma proteins, Predicted intracellular proteins, Transporters

Function

Multifunctional adapter protein involved in diverse array of functions including trafficking of transmembrane proteins, neuro and immunomodulation, exosome biogenesis, and tumorigenesis. Positively regulates TGFB1-mediated SMAD2/3 activation and TGFB1-induced epithelial-to-mesenchymal transition (EMT) and cell migration in various cell types. May increase TGFB1 signaling by enhancing cell-surface expression of TGFR1 by preventing the interaction between TGFR1 and CAV1 and subsequent CAV1-dependent internalization and degradation of TGFR1. In concert with SDC1/4 and PDCD6IP, regulates exosome biogenesis. Regulates migration, growth, proliferation, and cell cycle progression in a variety of cancer types. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.