SCUBA

ZFP36 — ZFP36 ring finger protein

ZFP36 belongs to a gene co-expression module in 15 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

ZFP36's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsImmediate Early NFkB
BCR/AP1/NFKb pathway
ARL5B, CDKN1A, CSRNP1, DUSP2, EGR1, EGR3, IER2, NFKBIA +3 moreView in SCUBA
CD4⁺ T cellsImmediate Early AP-1
TCR/AP1/NFKb pathway
BTG2, CD69, CDKN1A, DUSP1, EGR1, FOS, FOSB, IER2 +6 moreView in SCUBA
EndothelialShear Stress Response
Stress
DNAJB1, DUSP1, EGR1, FOS, FOSB, HES1, HSP90AA1, HSPA1A +11 moreView in SCUBA
Gamma-delta T cellsTCR Early Activation
TCR Signaling
BTG1, BTG2, CD69, CIRBP, CXCR4, DUSP1, EIF1, ETV3 +15 more
Glial cellsImmediate Early Gene Response
Activation
DNAJB1, EGR1, FOS, FOSB, HES1, HSP90AA1, HSPA1A, HSPA1B +3 moreView in SCUBA
Goblet cellsNF-κB Stress Response
Stress
ATF3, CCNL1, EGR3, IER3, MAFF, MYADM, NFKBIA, NR4A1 +1 moreView in SCUBA
Innate lymphoid cellsNF-κB Inflammatory Activation
Inflammation
CDKN1A, CSRNP1, DUSP1, DUSP2, DUSP6, ELL2, EZR, FOS +26 moreView in SCUBA
Lymphatic endothelialAP-1 Immediate Early
Inflammation
DUSP1, EGR1, FOS, FOSB, HES1, HSPA8, IER2, JUN +7 moreView in SCUBA
MacrophagesEarly response genes
Inflammatory
ATF3, BAG3, BTG2, CGAS, DNAJA1, DNAJA4, DNAJB1, DNAJB4 +39 moreView in SCUBA
MonocytesAP-1 Inflammatory Activation
Inflammatory
COQ7, DUSP1, FOS, IER2, JUN, JUNB, KCNE1, KLF6 +2 moreView in SCUBA
Mucosal-associated invariant T cellNF-κB Negative Feedback
Immune regulation
ARL4A, BCAS2, CSRNP1, CXCR4, ENSG00000285976, IDS, ITPRIP, NFKBIA +7 more
Natural Killer cellsNF-κB Activation
Inflammation
ADGRE5, BCL3, BHLHE40, CSRNP1, DUSP10, NFKB1, NFKB2, NINJ1 +3 moreView in SCUBA
NeutrophilsImmediate Early Response
Stress
ADM, BTG2, DUSP1, EGR1, FOS, IER2, JUNB
PericytesImmediate Early Gene
Stress
DNAJB1, EGR1, FOS, FOSB, HSPA1A, HSPA1B, IER2, JUN +3 moreView in SCUBA
Smooth muscle cellsImmediate Early Response
Stress
ATF3, BTG1, BTG2, CDKN1A, EGR1, FOS, GADD45B, HES1 +7 moreView in SCUBA

About the gene

SynonymsG0S24, NUP475, RNF162A, TIS11, TTP
Chromosome19: 39406847-39409412
Predicted locationIntracellular
Essential geneNo
Protein classPredicted intracellular proteins
Molecular functionDNA-binding, Ribonucleoprotein, RNA-binding
Biological processHost-virus interaction, mRNA transport, RNA-mediated gene silencing, Transport

Function

Zinc-finger RNA-binding protein that destabilizes several cytoplasmic AU-rich element (ARE)-containing mRNA transcripts by promoting their poly(A) tail removal or deadenylation, and hence provide a mechanism for attenuating protein synthesis. Acts as an 3'-untranslated region (UTR) ARE mRNA-binding adapter protein to communicate signaling events to the mRNA decay machinery. Recruits deadenylase CNOT7 (and probably the CCR4-NOT complex) via association with CNOT1, and hence promotes ARE-mediated mRNA deadenylation. Functions also by recruiting components of the cytoplasmic RNA decay machinery to the bound ARE-containing mRNAs. Self regulates by destabilizing its own mRNA. Binds to 3'-UTR ARE of numerous mRNAs and of its own mRNA. Plays a role in anti-inflammatory responses; suppresses tumor necrosis factor (TNF)-alpha production by stimulating ARE-mediated TNF-alpha mRNA decay and several other inflammatory ARE- containing mRNAs in interferon (IFN)- and/or lipopolysaccharide (LPS)- induced macrophages (By similarity). Also plays a role in the regulation of dendritic cell maturation at the post-transcriptional level, and hence operates as part of a negative feedback loop to limit the inflammatory response. Promotes ARE-mediated mRNA decay of hypoxia-inducible factor HIF1A mRNA during the response of endothelial cells to hypoxia. Positively regulates early adipogenesis of preadipocytes by promoting ARE-mediated mRNA decay of immediate early genes (IEGs) (By similarity). Negatively regulates hematopoietic/erythroid cell differentiation by promoting ARE-mediated mRNA decay of the transcription factor STAT5B mRNA. Plays a role in maintaining skeletal muscle satellite cell quiescence by promoting ARE-mediated mRNA decay of the myogenic determination factor MYOD1 mRNA (By similarity). Associates also with and regulates the expression of non-ARE-containing target mRNAs at the post-transcriptional level, such as MHC class I mRNAs. Participates in association with argonaute RISC catalytic components in the ARE-mediated mRNA decay mechanism; assists microRNA (miRNA) targeting ARE-containing mRNAs. May also play a role in the regulation of cytoplasmic mRNA decapping; enhances decapping of ARE-containing RNAs, in vitro. Involved in the delivery of target ARE-mRNAs to processing bodies (PBs). In addition to its cytosolic mRNA-decay function, affects nuclear pre-mRNA processing (By similarity). Negatively regulates nuclear poly(A)-binding protein PABPN1-stimulated polyadenylation activity on ARE-containing pre-mRNA during LPS- stimulated macrophages (By similarity). Also involved in the regulation of stress granule (SG) and P-body (PB) formation and fusion (By similarity). Plays a role in the regulation of keratinocyte proliferation, differentiation and apoptosis. Plays a role as a tumor suppressor by inhibiting cell proliferation in breast cancer cells. (Microbial infection) Negatively regulates HTLV-1 TAX- dependent transactivation of viral long terminal repeat (LTR) promoter

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.