SCUBA

ZFP36L1 — ZFP36 ring finger protein like 1

ZFP36L1 belongs to a gene co-expression module in 13 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

ZFP36L1's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsmRNA Splicing
RNA processing
AFF4, ARL6IP1, CALR, CCNL1, CLK1, DDX3X, DDX5, EIF4A2 +7 moreView in SCUBA
CD4⁺ T cellsCytokine receptor signaling
Immune regulation
C21orf91, C6orf62, DDX3X, HNRNPH1, ID2, IL15RA, IL18RAP, MMD +1 moreView in SCUBA
CD8⁺ T cellsImmediate Early Response
Stress
ARRDC3, ATF3, CLK1, EIF4A2, EIF5, GADD45B, IER5, JUN +6 moreView in SCUBA
FibroblastsNF-κB Immediate Early
Inflammatory
ATF3, DNAJA1, DUSP1, HLA-E, HSPA8, IRF1, MAFF, NFKBIA +4 moreView in SCUBA
Gamma-delta T cellsNK/T Cell Identity
T cell maturation
AFTPH, ARHGAP17, ASXL2, ATF7IP, CALCOCO2, CD244, CLK3, GDI1 +24 more
Glial cellsAnti-proliferative mRNA Decay
Stress
ABHD5, BCL6, EIF4A1, FUS, GADD45A, MAT2A, PLK2, RBBP6 +4 moreView in SCUBA
Goblet cellsmRNA Stability Control
RNA processing & translation
BTG1, DNAJB6, PNRC1, SRSF5, TENT5C, TSC22D1, TUBA1A, TXNIP +5 moreView in SCUBA
Innate lymphoid cellsILC Identity Program
Differentiation
AHR, APOL4, ARHGEF12, BLVRA, CD300LF, CDK2AP2, CEP83, COL4A4 +29 moreView in SCUBA
Lymphatic endothelialAhR mRNA Regulation
RNA processing & translation
CYP1B1, DHRS3, ESAM, HNRNPDL, HNRNPH1, LIF, SDC4, TIPARP +3 moreView in SCUBA
MacrophagesEarly response genes
Inflammatory
ATF3, BAG3, BTG2, CGAS, DNAJA1, DNAJA4, DNAJB1, DNAJB4 +39 moreView in SCUBA
Mucosal-associated invariant T cellmRNA Processing Translation
RNA processing & translation
ACTN4, CDC42SE1, CSDE1, DDX5, EIF4G1, GDI1, HNRNPU, MSN +7 more
NeutrophilsNeutrophil Survival Program
Inflammatory
B2M, BCL2A1, CEBPB, EIF1, FTH1, FTL, H3-3A, H3-3B +2 more
Smooth muscle cellshnRNP & Proteasome
RNA processing & translation
ARF1, CCT2, GDI2, HNRNPA2B1, HNRNPA3, HNRNPF, HNRNPU, PSMD8 +2 moreView in SCUBA

About the gene

SynonymsBerg36, BRF1, cMG1, ERF1, RNF162B, TIS11B
Chromosome14: 68787660-68796253
Predicted locationIntracellular
Essential geneNo
Protein classCancer-related genes, Plasma proteins, Predicted intracellular proteins
Molecular functionDevelopmental protein, DNA-binding, Ribonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA transport, Transport

Function

Zinc-finger RNA-binding protein that destabilizes several cytoplasmic AU-rich element (ARE)-containing mRNA transcripts by promoting their poly(A) tail removal or deadenylation, and hence provide a mechanism for attenuating protein synthesis. Acts as a 3'-untranslated region (UTR) ARE mRNA- binding adapter protein to communicate signaling events to the mRNA decay machinery. Functions by recruiting the CCR4-NOT deadenylase complex and components of the cytoplasmic RNA decay machinery to the bound ARE-containing mRNAs, and hence promotes ARE- mediated mRNA deadenylation and decay processes. Also induces the degradation of ARE- containing mRNAs even in absence of poly(A) tail (By similarity). Binds to 3'-UTR ARE of numerous mRNAs. Positively regulates early adipogenesis by promoting ARE-mediated mRNA decay of immediate early genes (IEGs) (By similarity). Promotes ARE- mediated mRNA decay of mineralocorticoid receptor NR3C2 mRNA in response to hypertonic stress. Negatively regulates hematopoietic/erythroid cell differentiation by promoting ARE-mediated mRNA decay of the transcription factor STAT5B mRNA. Positively regulates monocyte/macrophage cell differentiation by promoting ARE-mediated mRNA decay of the cyclin-dependent kinase CDK6 mRNA. Promotes degradation of ARE-containing pluripotency-associated mRNAs in embryonic stem cells (ESCs), such as NANOG, through a fibroblast growth factor (FGF)-induced MAPK-dependent signaling pathway, and hence attenuates ESC self-renewal and positively regulates mesendoderm differentiation (By similarity). May play a role in mediating pro-apoptotic effects in malignant B-cells by promoting ARE-mediated mRNA decay of BCL2 mRNA. In association with ZFP36L2 maintains quiescence on developing B lymphocytes by promoting ARE-mediated decay of several mRNAs encoding cell cycle regulators that help B cells progress through the cell cycle, and hence ensuring accurate variable-diversity-joining (VDJ) recombination and functional immune cell formation (By similarity). Together with ZFP36L2 is also necessary for thymocyte development and prevention of T-cell acute lymphoblastic leukemia (T-ALL) transformation by promoting ARE- mediated mRNA decay of the oncogenic transcription factor NOTCH1 mRNA (By similarity). Participates in the delivery of target ARE-mRNAs to processing bodies (PBs). In addition to its cytosolic mRNA-decay function, plays a role in the regulation of nuclear mRNA 3'- end processing; modulates mRNA 3'-end maturation efficiency of the DLL4 mRNA through binding with an ARE embedded in a weak noncanonical polyadenylation (poly(A)) signal in endothelial cells. Also involved in the regulation of stress granule (SG) and P-body (PB) formation and fusion. Plays a role in vasculogenesis and endocardial development (By similarity). Plays a role in the regulation of keratinocyte proliferation, differentiation and apoptosis. Plays a role in myoblast cell differentiation (By similarity).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.