SCUBA

ITM2C — Integral membrane protein 2C

ITM2C belongs to a gene co-expression module in 12 of 28 SCUBA cell types. Each module groups genes that rise and fall together in that cell type; the genes it shares a module with are its closest co-expression partners there.

ITM2C's module in each cell type

Cell typeModuleShares the module with
CD19⁺ B cellsB-cell Maturation
B cell maturation
ANK3, ANTXR2, CD24, COL4A3, COL4A4, CSGALNACT1, PDCD4, PPP1R2C +3 moreView in SCUBA
CD8⁺ T cellsEffector Memory CD8
T cell maturation
CLDND1, DENND2D, GIMAP1, GIMAP4, GIMAP7, GPR183, GZMK, KLRG1 +3 moreView in SCUBA
EndothelialActomyosin Contractility
Cytoskeletal
BCL7C, BLCAP, C20orf204, CMBL, CTDSPL, DDB2, FLRT2, KLHL4 +11 moreView in SCUBA
EnterocytesSurface colonocyte transport
Absorption
CA4, CD46, CITED1, CLCN1, DOCK4, GSN, HSPB1, LYPD8 +4 moreView in SCUBA
FibroblastsRho-ROCK Contractility
Cytoskeletal
ANXA6, ATP2B4, CBX6, CSDE1, DYNLT3, GNG12, PPP1CB, ROCK1 +1 moreView in SCUBA
Gamma-delta T cellsImmature T Cell
T cell maturation
A1BG, ACP5, CD38, CD7, ID3, MZB1, NCF1, NUDT14 +7 more
Glial cellsGlial Vesicle Trafficking
Housekeeping
BEX3, CCNI, FKBP1A, HMGN2, PGRMC1, PLD3, TCEAL7, TUBB +1 moreView in SCUBA
Lymphatic endothelialLymphatic Valve Identity
Valve formation
ALCAM, C12orf57, C17orf58, CFH, CLDN11, DEGS2, EBPL, EDNRB +13 moreView in SCUBA
MacrophagesAntimicrobial Oxidative Defense
Antibacterial
ADAMDEC1, ALDOA, APOL3, CALHM6, CLEC10A, COX16, CPVL, DEFA5 +30 moreView in SCUBA
Mucosal-associated invariant T cellTc17 / MAIT17
Tc17 program
AHR, BAIAP2, CA10, CCR9, GFPT2, HIC1, IL17A, IL2 +5 more
Natural Killer cellsILC1/NK Cytotoxic
Cytotoxicity
A1BG, CASK, CLDND1, EIF3G, GZMK, KLRB1, NCF1, PDCD4 +4 moreView in SCUBA
Smooth muscle cellsMatrisome Regulators
ECM remodeling
LPP, LUM, NBL1, PMP22, S100A13, TCEAL4, TIMP2, TMEM176B +1 moreView in SCUBA

About the gene

SynonymsBRI3, BRICD2C, E25, hRPC.1050_D_4, ITM3
Chromosome2: 230864639-230879248
Predicted locationIntracellular, Membrane
Essential geneNo
Protein classPredicted intracellular proteins, Predicted membrane proteins, Transporters

Function

Negative regulator of amyloid-beta peptide production. May inhibit the processing of APP by blocking its access to alpha- and beta-secretase. Binding to the beta-secretase-cleaved APP C-terminal fragment is negligible, suggesting that ITM2C is a poor gamma-secretase cleavage inhibitor. May play a role in TNF-induced cell death and neuronal differentiation (By similarity).

Human Protein Atlas · Open Targets · UniProt

Gene annotation from the Human Protein Atlas and UniProt; see sources & licences.